miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 211905 0.7 0.839591
Target:  5'- cGCGGCGGGCcCGGagguUCUUCCgcgacagagaugccGGCCAc -3'
miRNA:   3'- cCGCCGCCUGuGCU----AGAAGGa-------------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 153356 0.7 0.836426
Target:  5'- cGGCGGCGccGACGCGAUCcgUUUCgaGCCGa -3'
miRNA:   3'- -CCGCCGC--CUGUGCUAG--AAGGacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 224195 0.7 0.794666
Target:  5'- cGCGGCGGuuACGAUUUUCCgucGAUa- -3'
miRNA:   3'- cCGCCGCCugUGCUAGAAGGa--CUGgu -5'
16199 3' -56.2 NC_004065.1 + 144374 0.72 0.692228
Target:  5'- cGGCgcuGGCGGugACGAUCUggugccUCCUuGCCu -3'
miRNA:   3'- -CCG---CCGCCugUGCUAGA------AGGAcUGGu -5'
16199 3' -56.2 NC_004065.1 + 54522 0.68 0.900259
Target:  5'- -uCGGCGGACGCGuUCUgucuaCUGACg- -3'
miRNA:   3'- ccGCCGCCUGUGCuAGAag---GACUGgu -5'
16199 3' -56.2 NC_004065.1 + 65186 0.69 0.873177
Target:  5'- aGCGGCGGccauCGCGGUUUccUCCUcggaaacGGCCAg -3'
miRNA:   3'- cCGCCGCCu---GUGCUAGA--AGGA-------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 136687 0.7 0.828392
Target:  5'- cGGCGGCGGGCcggcuCGAgCUUUUauccgccacgaUGACCAu -3'
miRNA:   3'- -CCGCCGCCUGu----GCUaGAAGG-----------ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 186118 0.72 0.692228
Target:  5'- uGGCGGCGcaucGACGCGAUC-UCC-GACUc -3'
miRNA:   3'- -CCGCCGC----CUGUGCUAGaAGGaCUGGu -5'
16199 3' -56.2 NC_004065.1 + 103136 0.69 0.859465
Target:  5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3'
miRNA:   3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5'
16199 3' -56.2 NC_004065.1 + 176341 0.73 0.653003
Target:  5'- gGGCGGC-GACACGAUCaUCggaUGACUAu -3'
miRNA:   3'- -CCGCCGcCUGUGCUAGaAGg--ACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 114834 0.7 0.836426
Target:  5'- cGCGGCGGcCACGGcCggaUCCagGGCCAu -3'
miRNA:   3'- cCGCCGCCuGUGCUaGa--AGGa-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 70959 0.69 0.844287
Target:  5'- cGCGGCGGuCGguccaGAUCgcgaUUCUGACCAc -3'
miRNA:   3'- cCGCCGCCuGUg----CUAGa---AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 28995 0.7 0.811832
Target:  5'- cGGCGGCGGugGCGAggcgccgcgcgcacgCggCCUcgagucaGACCGg -3'
miRNA:   3'- -CCGCCGCCugUGCUa--------------GaaGGA-------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 130175 0.7 0.803321
Target:  5'- cGGCGGCgaucgGGGCGCaGAcgCUgaaacgCCUGGCCGg -3'
miRNA:   3'- -CCGCCG-----CCUGUG-CUa-GAa-----GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 143268 0.72 0.721185
Target:  5'- cGCGGCGGGgGCGGcagCUUCaagGGCCGa -3'
miRNA:   3'- cCGCCGCCUgUGCUa--GAAGga-CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 90993 0.72 0.701938
Target:  5'- uGGCGGaCGGACugcaGCG-UCUUCUUGACgCGg -3'
miRNA:   3'- -CCGCC-GCCUG----UGCuAGAAGGACUG-GU- -5'
16199 3' -56.2 NC_004065.1 + 168990 0.67 0.932842
Target:  5'- cGCGGCGGACcucggagGCGA-CaUCgUGGCCu -3'
miRNA:   3'- cCGCCGCCUG-------UGCUaGaAGgACUGGu -5'
16199 3' -56.2 NC_004065.1 + 182345 0.68 0.912165
Target:  5'- aGGuCGGUGGACgACGAUuccgacgacgaCUgcgacaccagCCUGACCAc -3'
miRNA:   3'- -CC-GCCGCCUG-UGCUA-----------GAa---------GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 4689 0.69 0.880787
Target:  5'- cGGCGGCGGACacuaACGAUCcgggaUGGCg- -3'
miRNA:   3'- -CCGCCGCCUG----UGCUAGaagg-ACUGgu -5'
16199 3' -56.2 NC_004065.1 + 202505 0.69 0.873177
Target:  5'- aGUGGUGGAggcacgcCGCGAugaaUCUggcgUCCUGACCGc -3'
miRNA:   3'- cCGCCGCCU-------GUGCU----AGA----AGGACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.