Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 29603 | 0.67 | 0.933328 |
Target: 5'- cGCGGUccugcaGGACuucGCGGacaUCUUCCUGGCgCAg -3' miRNA: 3'- cCGCCG------CCUG---UGCU---AGAAGGACUG-GU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 103136 | 0.69 | 0.859465 |
Target: 5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3' miRNA: 3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 106269 | 0.66 | 0.946871 |
Target: 5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3' miRNA: 3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 172270 | 0.69 | 0.844287 |
Target: 5'- cGGCGGCGGcgACgACGAUCUcucUCCUccCCu -3' miRNA: 3'- -CCGCCGCC--UG-UGCUAGA---AGGAcuGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 138247 | 0.66 | 0.965145 |
Target: 5'- -aUGGCGGACgACGAUCUcuccagCCUcGCCc -3' miRNA: 3'- ccGCCGCCUG-UGCUAGAa-----GGAcUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 202505 | 0.69 | 0.873177 |
Target: 5'- aGUGGUGGAggcacgcCGCGAugaaUCUggcgUCCUGACCGc -3' miRNA: 3'- cCGCCGCCU-------GUGCU----AGA----AGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 4689 | 0.69 | 0.880787 |
Target: 5'- cGGCGGCGGACacuaACGAUCcgggaUGGCg- -3' miRNA: 3'- -CCGCCGCCUG----UGCUAGaagg-ACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 38336 | 0.66 | 0.961905 |
Target: 5'- gGGUGGUGGGCugGGUCaaaugUUCgGGCg- -3' miRNA: 3'- -CCGCCGCCUGugCUAGa----AGGaCUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 211398 | 0.66 | 0.958815 |
Target: 5'- aGGUGGCGGAgGCGGgggaaacgugggCCUGGgCGg -3' miRNA: 3'- -CCGCCGCCUgUGCUagaa--------GGACUgGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 167354 | 0.66 | 0.950948 |
Target: 5'- cGGCGGCaGACAgGGUCgcCgCUG-CCGu -3' miRNA: 3'- -CCGCCGcCUGUgCUAGaaG-GACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 208304 | 0.66 | 0.950948 |
Target: 5'- aGCGGCa---GCGAaacCUUCCUGACCu -3' miRNA: 3'- cCGCCGccugUGCUa--GAAGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 92172 | 0.66 | 0.965145 |
Target: 5'- cGGCGGCGaucGACGCGGUCaaguUUCa--GCCGu -3' miRNA: 3'- -CCGCCGC---CUGUGCUAG----AAGgacUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 175733 | 0.66 | 0.946871 |
Target: 5'- aGGUGGCGGAgACGAUUagaCUugaggaggaacGACCGg -3' miRNA: 3'- -CCGCCGCCUgUGCUAGaagGA-----------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 205435 | 0.67 | 0.942576 |
Target: 5'- cGGCGGCGGugGCGG-CgacgacaCgcgcgGACCGc -3' miRNA: 3'- -CCGCCGCCugUGCUaGaag----Ga----CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 16610 | 0.67 | 0.938063 |
Target: 5'- cGCuGCGGACGCGAUCU-CUUcGGCg- -3' miRNA: 3'- cCGcCGCCUGUGCUAGAaGGA-CUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 175246 | 0.67 | 0.933328 |
Target: 5'- cGCGGUugggaGGACAUGAcuUCUUCCgaACCGg -3' miRNA: 3'- cCGCCG-----CCUGUGCU--AGAAGGacUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 168990 | 0.67 | 0.932842 |
Target: 5'- cGCGGCGGACcucggagGCGA-CaUCgUGGCCu -3' miRNA: 3'- cCGCCGCCUG-------UGCUaGaAGgACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 182345 | 0.68 | 0.912165 |
Target: 5'- aGGuCGGUGGACgACGAUuccgacgacgaCUgcgacaccagCCUGACCAc -3' miRNA: 3'- -CC-GCCGCCUG-UGCUA-----------GAa---------GGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 188671 | 0.66 | 0.961905 |
Target: 5'- cGCGGCGGGagacgACGGUCgUCa-GGCCGa -3' miRNA: 3'- cCGCCGCCUg----UGCUAGaAGgaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 185311 | 0.66 | 0.950948 |
Target: 5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3' miRNA: 3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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