miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 3' -56.2 NC_004065.1 + 29603 0.67 0.933328
Target:  5'- cGCGGUccugcaGGACuucGCGGacaUCUUCCUGGCgCAg -3'
miRNA:   3'- cCGCCG------CCUG---UGCU---AGAAGGACUG-GU- -5'
16199 3' -56.2 NC_004065.1 + 103136 0.69 0.859465
Target:  5'- cGGCGGCucACGCGAUCaugUUCCacGACCu -3'
miRNA:   3'- -CCGCCGccUGUGCUAG---AAGGa-CUGGu -5'
16199 3' -56.2 NC_004065.1 + 106269 0.66 0.946871
Target:  5'- cGGCGcGCGGcgcaccgagguGCugGAcucggaggccaUCUcgaUCCUGACCu -3'
miRNA:   3'- -CCGC-CGCC-----------UGugCU-----------AGA---AGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 172270 0.69 0.844287
Target:  5'- cGGCGGCGGcgACgACGAUCUcucUCCUccCCu -3'
miRNA:   3'- -CCGCCGCC--UG-UGCUAGA---AGGAcuGGu -5'
16199 3' -56.2 NC_004065.1 + 138247 0.66 0.965145
Target:  5'- -aUGGCGGACgACGAUCUcuccagCCUcGCCc -3'
miRNA:   3'- ccGCCGCCUG-UGCUAGAa-----GGAcUGGu -5'
16199 3' -56.2 NC_004065.1 + 202505 0.69 0.873177
Target:  5'- aGUGGUGGAggcacgcCGCGAugaaUCUggcgUCCUGACCGc -3'
miRNA:   3'- cCGCCGCCU-------GUGCU----AGA----AGGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 4689 0.69 0.880787
Target:  5'- cGGCGGCGGACacuaACGAUCcgggaUGGCg- -3'
miRNA:   3'- -CCGCCGCCUG----UGCUAGaagg-ACUGgu -5'
16199 3' -56.2 NC_004065.1 + 38336 0.66 0.961905
Target:  5'- gGGUGGUGGGCugGGUCaaaugUUCgGGCg- -3'
miRNA:   3'- -CCGCCGCCUGugCUAGa----AGGaCUGgu -5'
16199 3' -56.2 NC_004065.1 + 211398 0.66 0.958815
Target:  5'- aGGUGGCGGAgGCGGgggaaacgugggCCUGGgCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUagaa--------GGACUgGU- -5'
16199 3' -56.2 NC_004065.1 + 167354 0.66 0.950948
Target:  5'- cGGCGGCaGACAgGGUCgcCgCUG-CCGu -3'
miRNA:   3'- -CCGCCGcCUGUgCUAGaaG-GACuGGU- -5'
16199 3' -56.2 NC_004065.1 + 208304 0.66 0.950948
Target:  5'- aGCGGCa---GCGAaacCUUCCUGACCu -3'
miRNA:   3'- cCGCCGccugUGCUa--GAAGGACUGGu -5'
16199 3' -56.2 NC_004065.1 + 92172 0.66 0.965145
Target:  5'- cGGCGGCGaucGACGCGGUCaaguUUCa--GCCGu -3'
miRNA:   3'- -CCGCCGC---CUGUGCUAG----AAGgacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 175733 0.66 0.946871
Target:  5'- aGGUGGCGGAgACGAUUagaCUugaggaggaacGACCGg -3'
miRNA:   3'- -CCGCCGCCUgUGCUAGaagGA-----------CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 205435 0.67 0.942576
Target:  5'- cGGCGGCGGugGCGG-CgacgacaCgcgcgGACCGc -3'
miRNA:   3'- -CCGCCGCCugUGCUaGaag----Ga----CUGGU- -5'
16199 3' -56.2 NC_004065.1 + 16610 0.67 0.938063
Target:  5'- cGCuGCGGACGCGAUCU-CUUcGGCg- -3'
miRNA:   3'- cCGcCGCCUGUGCUAGAaGGA-CUGgu -5'
16199 3' -56.2 NC_004065.1 + 175246 0.67 0.933328
Target:  5'- cGCGGUugggaGGACAUGAcuUCUUCCgaACCGg -3'
miRNA:   3'- cCGCCG-----CCUGUGCU--AGAAGGacUGGU- -5'
16199 3' -56.2 NC_004065.1 + 168990 0.67 0.932842
Target:  5'- cGCGGCGGACcucggagGCGA-CaUCgUGGCCu -3'
miRNA:   3'- cCGCCGCCUG-------UGCUaGaAGgACUGGu -5'
16199 3' -56.2 NC_004065.1 + 182345 0.68 0.912165
Target:  5'- aGGuCGGUGGACgACGAUuccgacgacgaCUgcgacaccagCCUGACCAc -3'
miRNA:   3'- -CC-GCCGCCUG-UGCUA-----------GAa---------GGACUGGU- -5'
16199 3' -56.2 NC_004065.1 + 188671 0.66 0.961905
Target:  5'- cGCGGCGGGagacgACGGUCgUCa-GGCCGa -3'
miRNA:   3'- cCGCCGCCUg----UGCUAGaAGgaCUGGU- -5'
16199 3' -56.2 NC_004065.1 + 185311 0.66 0.950948
Target:  5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3'
miRNA:   3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.