Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16199 | 3' | -56.2 | NC_004065.1 | + | 138301 | 0.66 | 0.958462 |
Target: 5'- aGGCcGUGGACGCGGc---CCUGAUCGc -3' miRNA: 3'- -CCGcCGCCUGUGCUagaaGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 138557 | 0.66 | 0.954811 |
Target: 5'- cGGCGGCGGACugacggcgACGGUgCcgUCCgcuCCGg -3' miRNA: 3'- -CCGCCGCCUG--------UGCUA-Ga-AGGacuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 67679 | 0.66 | 0.954434 |
Target: 5'- cGGCGGCGGcgGCGGgcccuccaucucuUCUUCCgccGCCu -3' miRNA: 3'- -CCGCCGCCugUGCU-------------AGAAGGac-UGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 185311 | 0.66 | 0.950948 |
Target: 5'- -aCGuGCGGACaucGCGAacgaccgcagUCUUCCUGAUCu -3' miRNA: 3'- ccGC-CGCCUG---UGCU----------AGAAGGACUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 74603 | 0.66 | 0.950948 |
Target: 5'- cGGUGGCGGugGCGGcCgagUUCCcgGAaCCGc -3' miRNA: 3'- -CCGCCGCCugUGCUaG---AAGGa-CU-GGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 32972 | 0.66 | 0.950948 |
Target: 5'- cGCGGCGGAgCAUGA-CggaggCCUcgcgGACCAg -3' miRNA: 3'- cCGCCGCCU-GUGCUaGaa---GGA----CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 71686 | 0.66 | 0.946871 |
Target: 5'- cGGCGGCGGcaACGgGAgcggCgcgUCCUcucgacagaaaGACCAg -3' miRNA: 3'- -CCGCCGCC--UGUgCUa---Ga--AGGA-----------CUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 56514 | 0.67 | 0.938063 |
Target: 5'- cGGCGaCGGACGCGAgauuUCUUCagagUGGCg- -3' miRNA: 3'- -CCGCcGCCUGUGCU----AGAAGg---ACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 120556 | 0.67 | 0.933328 |
Target: 5'- cGGCGGCGGucgGCGCGAgCgggCggGACCu -3' miRNA: 3'- -CCGCCGCC---UGUGCUaGaa-GgaCUGGu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 128457 | 0.67 | 0.928371 |
Target: 5'- aGGCGuccGCGGGCGCGAUCaggcuaccaCUG-CCAg -3' miRNA: 3'- -CCGC---CGCCUGUGCUAGaag------GACuGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 194825 | 0.67 | 0.928371 |
Target: 5'- uGGCGGUGGccgcCACGuUCU-CCaGGCCGa -3' miRNA: 3'- -CCGCCGCCu---GUGCuAGAaGGaCUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 223231 | 0.67 | 0.923191 |
Target: 5'- aGCGGC-GACGCGGUCUUCUgGAa-- -3' miRNA: 3'- cCGCCGcCUGUGCUAGAAGGaCUggu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 62658 | 0.67 | 0.923191 |
Target: 5'- uGGCGGCGGAgACGGcagCggcgacCCUGucuGCCGc -3' miRNA: 3'- -CCGCCGCCUgUGCUa--Gaa----GGAC---UGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 186494 | 0.68 | 0.912165 |
Target: 5'- cGGa-GCgGGACGcCGAucgacUCUUCCUGGCCGc -3' miRNA: 3'- -CCgcCG-CCUGU-GCU-----AGAAGGACUGGU- -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 187662 | 0.68 | 0.912165 |
Target: 5'- cGGCGGgguccaCGGGCACGAg---CCUGAUg- -3' miRNA: 3'- -CCGCC------GCCUGUGCUagaaGGACUGgu -5' |
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16199 | 3' | -56.2 | NC_004065.1 | + | 134036 | 0.66 | 0.961905 |
Target: 5'- uGGCGGCGGAggcUGCGAUaugaggaaCUUGugCAa -3' miRNA: 3'- -CCGCCGCCU---GUGCUAgaa-----GGACugGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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