miRNA display CGI


Results 1 - 20 of 300 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16199 5' -60.4 NC_004065.1 + 67460 0.66 0.836188
Target:  5'- gUCGGC--CGAGGCgGCGGUGUaCGUg -3'
miRNA:   3'- aAGCCGuaGCUCUGgUGCCGCG-GCGg -5'
16199 5' -60.4 NC_004065.1 + 219241 0.66 0.836188
Target:  5'- uUUCGGag-CuGGAgCAC-GCGCCGCCg -3'
miRNA:   3'- -AAGCCguaGcUCUgGUGcCGCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 75667 0.66 0.836188
Target:  5'- gUCGGCGagGcGGCCGCGGgCugauucuugGCCGCg -3'
miRNA:   3'- aAGCCGUagCuCUGGUGCC-G---------CGGCGg -5'
16199 5' -60.4 NC_004065.1 + 28994 0.66 0.836188
Target:  5'- -cCGGCggCGGuGGCgA-GGCGCCGCg -3'
miRNA:   3'- aaGCCGuaGCU-CUGgUgCCGCGGCGg -5'
16199 5' -60.4 NC_004065.1 + 107260 0.66 0.835407
Target:  5'- -gCGGCgcGUCGAGGguaaccagaugauCCugGGCGUC-CCg -3'
miRNA:   3'- aaGCCG--UAGCUCU-------------GGugCCGCGGcGG- -5'
16199 5' -60.4 NC_004065.1 + 131869 0.66 0.835407
Target:  5'- --aGGCggCGGuGGCgGCGGCGacuaucaCCGCCa -3'
miRNA:   3'- aagCCGuaGCU-CUGgUGCCGC-------GGCGG- -5'
16199 5' -60.4 NC_004065.1 + 83401 0.66 0.835407
Target:  5'- -aCGGCGUucaccacCGaAGA-CACGGCcCCGCCg -3'
miRNA:   3'- aaGCCGUA-------GC-UCUgGUGCCGcGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 35194 0.66 0.828305
Target:  5'- gUCGGCcUgGAGAacgUgGCGGCcaCCGCCa -3'
miRNA:   3'- aAGCCGuAgCUCU---GgUGCCGc-GGCGG- -5'
16199 5' -60.4 NC_004065.1 + 34260 0.66 0.828305
Target:  5'- -aUGGUcagCGcGA-CACGGCGCCGUCg -3'
miRNA:   3'- aaGCCGua-GCuCUgGUGCCGCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 89795 0.66 0.828305
Target:  5'- aUCGGauacgaCAUCGGcGGCCGuCuGCGCCGCg -3'
miRNA:   3'- aAGCC------GUAGCU-CUGGU-GcCGCGGCGg -5'
16199 5' -60.4 NC_004065.1 + 140832 0.66 0.82671
Target:  5'- --aGGUGUgGAGACUcuccgacaagaagACGGCccugaagGCCGCCg -3'
miRNA:   3'- aagCCGUAgCUCUGG-------------UGCCG-------CGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 226450 0.66 0.825909
Target:  5'- cUCGcCgAUCGAGACCGgGcucgccuucugccaGCGCCGCUg -3'
miRNA:   3'- aAGCcG-UAGCUCUGGUgC--------------CGCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 120117 0.66 0.820263
Target:  5'- -aCGGCG-CuuGACuCGcCGGCGCCGUCc -3'
miRNA:   3'- aaGCCGUaGcuCUG-GU-GCCGCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 33046 0.66 0.820263
Target:  5'- -aCGGauaCGAGGauGCgGGCGCCGCCu -3'
miRNA:   3'- aaGCCguaGCUCUggUG-CCGCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 85787 0.66 0.820263
Target:  5'- gUCGGCGacCGAGGCgCGagaacCGGCGUCGgCg -3'
miRNA:   3'- aAGCCGUa-GCUCUG-GU-----GCCGCGGCgG- -5'
16199 5' -60.4 NC_004065.1 + 157981 0.66 0.820263
Target:  5'- -aUGGCGUacacguacucCGGGugCA--GCGCCGCCa -3'
miRNA:   3'- aaGCCGUA----------GCUCugGUgcCGCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 48341 0.66 0.820263
Target:  5'- -cCGGgGUCGgaAGACCGaGGuCGCgGCCu -3'
miRNA:   3'- aaGCCgUAGC--UCUGGUgCC-GCGgCGG- -5'
16199 5' -60.4 NC_004065.1 + 117454 0.66 0.820263
Target:  5'- -aCuGCGUCGuccggcuCCGCGGCcgcucGCCGCCa -3'
miRNA:   3'- aaGcCGUAGCucu----GGUGCCG-----CGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 96284 0.66 0.820263
Target:  5'- -gCGGCca-GGGGCguCACGGaCGCCGUCc -3'
miRNA:   3'- aaGCCGuagCUCUG--GUGCC-GCGGCGG- -5'
16199 5' -60.4 NC_004065.1 + 163253 0.66 0.820263
Target:  5'- gUCGGCG-C-AG-CgGCGGCGCCGgCg -3'
miRNA:   3'- aAGCCGUaGcUCuGgUGCCGCGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.