miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 3' -53.9 NC_001347.2 + 113540 0.66 0.986251
Target:  5'- cGUACC--GCGACGCCGaccCAcGCUGCa -3'
miRNA:   3'- -CGUGGucCGCUGUGGCauaGU-CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 117844 0.66 0.986251
Target:  5'- aGCACCGGcggccgcugacGCGGCgACCGcGUCAGaCgggGCg -3'
miRNA:   3'- -CGUGGUC-----------CGCUG-UGGCaUAGUC-Ga--UG- -5'
1620 3' -53.9 NC_001347.2 + 126917 0.66 0.986251
Target:  5'- cGCACCuGGCGggcuucuucgGCACCuccacgCAGCUGg -3'
miRNA:   3'- -CGUGGuCCGC----------UGUGGcaua--GUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 197474 0.66 0.984551
Target:  5'- aGCugCugguGGUGAC-CCaggGUCAGUUGCg -3'
miRNA:   3'- -CGugGu---CCGCUGuGGca-UAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 209923 0.66 0.984551
Target:  5'- uGCuguguCCAaccGUGGCACCGUAggcggaaCAGCUGCc -3'
miRNA:   3'- -CGu----GGUc--CGCUGUGGCAUa------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 25355 0.66 0.984373
Target:  5'- cCGCguGGCGcugcacaccuaugGCGCCGUGgguuggCAGCUGg -3'
miRNA:   3'- cGUGguCCGC-------------UGUGGCAUa-----GUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 65219 0.66 0.982696
Target:  5'- cGUGCguGGaCGAC-CUGUGccgCGGCUACg -3'
miRNA:   3'- -CGUGguCC-GCUGuGGCAUa--GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 129895 0.66 0.982696
Target:  5'- aCGgUGGGCGGCAUgc-GUCAGCUACu -3'
miRNA:   3'- cGUgGUCCGCUGUGgcaUAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 107326 0.66 0.982305
Target:  5'- gGCGCCAGcCGAC-CCaGUGgcguuucgccugCGGCUGCg -3'
miRNA:   3'- -CGUGGUCcGCUGuGG-CAUa-----------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 150169 0.66 0.981504
Target:  5'- cGCGCCcagguAGGCcguuacugucugcagGACGCCGUAUUGG-UGCg -3'
miRNA:   3'- -CGUGG-----UCCG---------------CUGUGGCAUAGUCgAUG- -5'
1620 3' -53.9 NC_001347.2 + 92377 0.66 0.980677
Target:  5'- aGCaACCAGGCGccgGCGCCGccuagcGUCA-CUGCc -3'
miRNA:   3'- -CG-UGGUCCGC---UGUGGCa-----UAGUcGAUG- -5'
1620 3' -53.9 NC_001347.2 + 149055 0.66 0.980677
Target:  5'- aGUACa--GCGACACCG-AUaGGCUGCg -3'
miRNA:   3'- -CGUGgucCGCUGUGGCaUAgUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 154434 0.66 0.980677
Target:  5'- uGUugCGGGUGGCGCCGa---GGCUu- -3'
miRNA:   3'- -CGugGUCCGCUGUGGCauagUCGAug -5'
1620 3' -53.9 NC_001347.2 + 192639 0.66 0.980677
Target:  5'- aGCACguGGaGACGCUGcGUCGGUuucUGCg -3'
miRNA:   3'- -CGUGguCCgCUGUGGCaUAGUCG---AUG- -5'
1620 3' -53.9 NC_001347.2 + 29917 0.66 0.979384
Target:  5'- gGCACCGgcagcccauccucguGGaGGCACCGcgaCAGCUACc -3'
miRNA:   3'- -CGUGGU---------------CCgCUGUGGCauaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 148369 0.66 0.978487
Target:  5'- -gACCGGcuGCGACAUCGcaaaaaCGGCUACa -3'
miRNA:   3'- cgUGGUC--CGCUGUGGCaua---GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 125824 0.66 0.978487
Target:  5'- gGCGCUGGGCcagcuGCAUCGUGcCGGCgcgACg -3'
miRNA:   3'- -CGUGGUCCGc----UGUGGCAUaGUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 86917 0.66 0.978487
Target:  5'- cGC-CCAGGagacaGGCGCCGUAgcUCAuuUGCg -3'
miRNA:   3'- -CGuGGUCCg----CUGUGGCAU--AGUcgAUG- -5'
1620 3' -53.9 NC_001347.2 + 128439 0.67 0.973566
Target:  5'- gGCGCCugcuGCGugGCCGUcaagCGGCgcgACg -3'
miRNA:   3'- -CGUGGuc--CGCugUGGCAua--GUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 208443 0.67 0.973566
Target:  5'- aGCGCCGucaacuCGAUGCCGg--CGGCUGCa -3'
miRNA:   3'- -CGUGGUcc----GCUGUGGCauaGUCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.