miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 3' -53.9 NC_001347.2 + 82653 0.67 0.964727
Target:  5'- gGCACCgAGGCcucuaGAagGCCGUAcCAGCUGa -3'
miRNA:   3'- -CGUGG-UCCG-----CUg-UGGCAUaGUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 79653 0.67 0.961368
Target:  5'- aGCGCCAGGCGGCugauCUG---CAGCg-- -3'
miRNA:   3'- -CGUGGUCCGCUGu---GGCauaGUCGaug -5'
1620 3' -53.9 NC_001347.2 + 184985 0.67 0.964727
Target:  5'- gGCugCAGGCGGCagcggauacugGCCGUGaCuuGCUGg -3'
miRNA:   3'- -CGugGUCCGCUG-----------UGGCAUaGu-CGAUg -5'
1620 3' -53.9 NC_001347.2 + 143502 0.67 0.966012
Target:  5'- cGgACCGGGCGGCcuucuACCGUAcCGuccuccguuuggaucGCUGCg -3'
miRNA:   3'- -CgUGGUCCGCUG-----UGGCAUaGU---------------CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 32218 0.67 0.964727
Target:  5'- cCGCCAGGaaCGAUaACCGUGUCcGCUcaACu -3'
miRNA:   3'- cGUGGUCC--GCUG-UGGCAUAGuCGA--UG- -5'
1620 3' -53.9 NC_001347.2 + 170401 0.67 0.967876
Target:  5'- cGCGCUGuGGCgcgagaugGACACCGUGUC-GCgGCa -3'
miRNA:   3'- -CGUGGU-CCG--------CUGUGGCAUAGuCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 128439 0.67 0.973566
Target:  5'- gGCGCCugcuGCGugGCCGUcaagCGGCgcgACg -3'
miRNA:   3'- -CGUGGuc--CGCugUGGCAua--GUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 208443 0.67 0.973566
Target:  5'- aGCGCCGucaacuCGAUGCCGg--CGGCUGCa -3'
miRNA:   3'- -CGUGGUcc----GCUGUGGCauaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 18419 0.67 0.967876
Target:  5'- cGCACCgAGGUGGaGCCGUugcUCAuGCUGg -3'
miRNA:   3'- -CGUGG-UCCGCUgUGGCAu--AGU-CGAUg -5'
1620 3' -53.9 NC_001347.2 + 172306 0.67 0.96757
Target:  5'- aGCACCaggaggagggcaAGGCGACGCaGUGUCuguuccaGGCgGCa -3'
miRNA:   3'- -CGUGG------------UCCGCUGUGgCAUAG-------UCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 129502 0.68 0.945734
Target:  5'- uCugCAGcGCGGCGCCGccucGUCGGgUACc -3'
miRNA:   3'- cGugGUC-CGCUGUGGCa---UAGUCgAUG- -5'
1620 3' -53.9 NC_001347.2 + 1916 0.68 0.945734
Target:  5'- gGCGCUGGGCGcggugcugcccGCGCgGUGgcUgGGCUGCg -3'
miRNA:   3'- -CGUGGUCCGC-----------UGUGgCAU--AgUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 175050 0.68 0.945734
Target:  5'- -aACgAGaGCGGCGCCGUcuUCGGCgUGCa -3'
miRNA:   3'- cgUGgUC-CGCUGUGGCAu-AGUCG-AUG- -5'
1620 3' -53.9 NC_001347.2 + 22132 0.68 0.94998
Target:  5'- gGCAgCAugGGCGACACCGccUCGGUUu- -3'
miRNA:   3'- -CGUgGU--CCGCUGUGGCauAGUCGAug -5'
1620 3' -53.9 NC_001347.2 + 150453 0.68 0.94998
Target:  5'- uGUGCCcGGCGACGCgGguucuguggCGGCUAUg -3'
miRNA:   3'- -CGUGGuCCGCUGUGgCaua------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 97909 0.68 0.951614
Target:  5'- gGCGUCGGGCGGCGgCGguaacacacggcgaAUCAGUUGCg -3'
miRNA:   3'- -CGUGGUCCGCUGUgGCa-------------UAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 137380 0.68 0.953606
Target:  5'- cGUACCuagGGGUGugGCUGUAUacguaagcggauaUGGCUACa -3'
miRNA:   3'- -CGUGG---UCCGCugUGGCAUA-------------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 1309 0.68 0.953998
Target:  5'- aCGCgCGGGUGACGCCGcg-CAGCc-- -3'
miRNA:   3'- cGUG-GUCCGCUGUGGCauaGUCGaug -5'
1620 3' -53.9 NC_001347.2 + 187352 0.68 0.957793
Target:  5'- cGUugCGuGGcCGugGCgCGUcgCGGCUACa -3'
miRNA:   3'- -CGugGU-CC-GCugUG-GCAuaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 165866 0.69 0.93655
Target:  5'- gGCGgCAGG-GACACCGaUGUCgAGCcgGCg -3'
miRNA:   3'- -CGUgGUCCgCUGUGGC-AUAG-UCGa-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.