miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 3' -53.9 NC_001347.2 + 142769 1.11 0.004976
Target:  5'- aGCACCAGGCGACACCGUAUCAGCUACc -3'
miRNA:   3'- -CGUGGUCCGCUGUGGCAUAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 143502 0.67 0.966012
Target:  5'- cGgACCGGGCGGCcuucuACCGUAcCGuccuccguuuggaucGCUGCg -3'
miRNA:   3'- -CgUGGUCCGCUG-----UGGCAUaGU---------------CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 148369 0.66 0.978487
Target:  5'- -gACCGGcuGCGACAUCGcaaaaaCGGCUACa -3'
miRNA:   3'- cgUGGUC--CGCUGUGGCaua---GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 149055 0.66 0.980677
Target:  5'- aGUACa--GCGACACCG-AUaGGCUGCg -3'
miRNA:   3'- -CGUGgucCGCUGUGGCaUAgUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 150169 0.66 0.981504
Target:  5'- cGCGCCcagguAGGCcguuacugucugcagGACGCCGUAUUGG-UGCg -3'
miRNA:   3'- -CGUGG-----UCCG---------------CUGUGGCAUAGUCgAUG- -5'
1620 3' -53.9 NC_001347.2 + 150453 0.68 0.94998
Target:  5'- uGUGCCcGGCGACGCgGguucuguggCGGCUAUg -3'
miRNA:   3'- -CGUGGuCCGCUGUGgCaua------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 154434 0.66 0.980677
Target:  5'- uGUugCGGGUGGCGCCGa---GGCUu- -3'
miRNA:   3'- -CGugGUCCGCUGUGGCauagUCGAug -5'
1620 3' -53.9 NC_001347.2 + 162023 0.7 0.903382
Target:  5'- ---aCAGGUucuGCGCCGUGcUCAGCUGCu -3'
miRNA:   3'- cgugGUCCGc--UGUGGCAU-AGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 165866 0.69 0.93655
Target:  5'- gGCGgCAGG-GACACCGaUGUCgAGCcgGCg -3'
miRNA:   3'- -CGUgGUCCgCUGUGGC-AUAG-UCGa-UG- -5'
1620 3' -53.9 NC_001347.2 + 168225 0.71 0.846543
Target:  5'- cGCGCCuccGUGGCAgCCGUuucCAGCUGCg -3'
miRNA:   3'- -CGUGGuc-CGCUGU-GGCAua-GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 170401 0.67 0.967876
Target:  5'- cGCGCUGuGGCgcgagaugGACACCGUGUC-GCgGCa -3'
miRNA:   3'- -CGUGGU-CCG--------CUGUGGCAUAGuCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 172306 0.67 0.96757
Target:  5'- aGCACCaggaggagggcaAGGCGACGCaGUGUCuguuccaGGCgGCa -3'
miRNA:   3'- -CGUGG------------UCCGCUGUGgCAUAG-------UCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 175050 0.68 0.945734
Target:  5'- -aACgAGaGCGGCGCCGUcuUCGGCgUGCa -3'
miRNA:   3'- cgUGgUC-CGCUGUGGCAu-AGUCG-AUG- -5'
1620 3' -53.9 NC_001347.2 + 184985 0.67 0.964727
Target:  5'- gGCugCAGGCGGCagcggauacugGCCGUGaCuuGCUGg -3'
miRNA:   3'- -CGugGUCCGCUG-----------UGGCAUaGu-CGAUg -5'
1620 3' -53.9 NC_001347.2 + 185141 0.74 0.720297
Target:  5'- cCGCCGGGCGGCACgGgcaagugcuUCAGCaGCa -3'
miRNA:   3'- cGUGGUCCGCUGUGgCau-------AGUCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 187352 0.68 0.957793
Target:  5'- cGUugCGuGGcCGugGCgCGUcgCGGCUACa -3'
miRNA:   3'- -CGugGU-CC-GCugUG-GCAuaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 192639 0.66 0.980677
Target:  5'- aGCACguGGaGACGCUGcGUCGGUuucUGCg -3'
miRNA:   3'- -CGUGguCCgCUGUGGCaUAGUCG---AUG- -5'
1620 3' -53.9 NC_001347.2 + 197474 0.66 0.984551
Target:  5'- aGCugCugguGGUGAC-CCaggGUCAGUUGCg -3'
miRNA:   3'- -CGugGu---CCGCUGuGGca-UAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 208443 0.67 0.973566
Target:  5'- aGCGCCGucaacuCGAUGCCGg--CGGCUGCa -3'
miRNA:   3'- -CGUGGUcc----GCUGUGGCauaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 209923 0.66 0.984551
Target:  5'- uGCuguguCCAaccGUGGCACCGUAggcggaaCAGCUGCc -3'
miRNA:   3'- -CGu----GGUc--CGCUGUGGCAUa------GUCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.