miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 3' -53.9 NC_001347.2 + 140706 0.7 0.903382
Target:  5'- gGCGCUA-GCGugGCCGUAccuaUCGGCUc- -3'
miRNA:   3'- -CGUGGUcCGCugUGGCAU----AGUCGAug -5'
1620 3' -53.9 NC_001347.2 + 137380 0.68 0.953606
Target:  5'- cGUACCuagGGGUGugGCUGUAUacguaagcggauaUGGCUACa -3'
miRNA:   3'- -CGUGG---UCCGCugUGGCAUA-------------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 129895 0.66 0.982696
Target:  5'- aCGgUGGGCGGCAUgc-GUCAGCUACu -3'
miRNA:   3'- cGUgGUCCGCUGUGgcaUAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 129502 0.68 0.945734
Target:  5'- uCugCAGcGCGGCGCCGccucGUCGGgUACc -3'
miRNA:   3'- cGugGUC-CGCUGUGGCa---UAGUCgAUG- -5'
1620 3' -53.9 NC_001347.2 + 128439 0.67 0.973566
Target:  5'- gGCGCCugcuGCGugGCCGUcaagCGGCgcgACg -3'
miRNA:   3'- -CGUGGuc--CGCugUGGCAua--GUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 126917 0.66 0.986251
Target:  5'- cGCACCuGGCGggcuucuucgGCACCuccacgCAGCUGg -3'
miRNA:   3'- -CGUGGuCCGC----------UGUGGcaua--GUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 125824 0.66 0.978487
Target:  5'- gGCGCUGGGCcagcuGCAUCGUGcCGGCgcgACg -3'
miRNA:   3'- -CGUGGUCCGc----UGUGGCAUaGUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 117844 0.66 0.986251
Target:  5'- aGCACCGGcggccgcugacGCGGCgACCGcGUCAGaCgggGCg -3'
miRNA:   3'- -CGUGGUC-----------CGCUG-UGGCaUAGUC-Ga--UG- -5'
1620 3' -53.9 NC_001347.2 + 113540 0.66 0.986251
Target:  5'- cGUACC--GCGACGCCGaccCAcGCUGCa -3'
miRNA:   3'- -CGUGGucCGCUGUGGCauaGU-CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 108415 0.71 0.846543
Target:  5'- cCACCGcGGCGACA----AUCAGCUGCa -3'
miRNA:   3'- cGUGGU-CCGCUGUggcaUAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 107326 0.66 0.982305
Target:  5'- gGCGCCAGcCGAC-CCaGUGgcguuucgccugCGGCUGCg -3'
miRNA:   3'- -CGUGGUCcGCUGuGG-CAUa-----------GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 105712 0.67 0.964727
Target:  5'- cGUACgAGGagguaaaGGCuGCCGUGcagCAGCUGCa -3'
miRNA:   3'- -CGUGgUCCg------CUG-UGGCAUa--GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 97909 0.68 0.951614
Target:  5'- gGCGUCGGGCGGCGgCGguaacacacggcgaAUCAGUUGCg -3'
miRNA:   3'- -CGUGGUCCGCUGUgGCa-------------UAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 96811 0.69 0.921019
Target:  5'- cCACCAGGUgccggcgacuGACGCCGgcAUCGGCa-- -3'
miRNA:   3'- cGUGGUCCG----------CUGUGGCa-UAGUCGaug -5'
1620 3' -53.9 NC_001347.2 + 96385 0.71 0.862015
Target:  5'- -aACCAGGCGGCGgCCGUgcgcAUCGcCUGCc -3'
miRNA:   3'- cgUGGUCCGCUGU-GGCA----UAGUcGAUG- -5'
1620 3' -53.9 NC_001347.2 + 95885 0.69 0.923212
Target:  5'- uGCACagcuucacggagaaGGGCGACGCCacggcGUGUCcuuGCUACc -3'
miRNA:   3'- -CGUGg-------------UCCGCUGUGG-----CAUAGu--CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 95475 0.69 0.909494
Target:  5'- cGCGUCAcGCGGCGCCGgUGUCGGCg-- -3'
miRNA:   3'- -CGUGGUcCGCUGUGGC-AUAGUCGaug -5'
1620 3' -53.9 NC_001347.2 + 92377 0.66 0.980677
Target:  5'- aGCaACCAGGCGccgGCGCCGccuagcGUCA-CUGCc -3'
miRNA:   3'- -CG-UGGUCCGC---UGUGGCa-----UAGUcGAUG- -5'
1620 3' -53.9 NC_001347.2 + 90971 0.69 0.909494
Target:  5'- uCACCAauguGGCGACGCUGUGccgCAagcGCUACc -3'
miRNA:   3'- cGUGGU----CCGCUGUGGCAUa--GU---CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 86917 0.66 0.978487
Target:  5'- cGC-CCAGGagacaGGCGCCGUAgcUCAuuUGCg -3'
miRNA:   3'- -CGuGGUCCg----CUGUGGCAU--AGUcgAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.