miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 3' -53.9 NC_001347.2 + 25355 0.66 0.984373
Target:  5'- cCGCguGGCGcugcacaccuaugGCGCCGUGgguuggCAGCUGg -3'
miRNA:   3'- cGUGguCCGC-------------UGUGGCAUa-----GUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 197474 0.66 0.984551
Target:  5'- aGCugCugguGGUGAC-CCaggGUCAGUUGCg -3'
miRNA:   3'- -CGugGu---CCGCUGuGGca-UAGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 126917 0.66 0.986251
Target:  5'- cGCACCuGGCGggcuucuucgGCACCuccacgCAGCUGg -3'
miRNA:   3'- -CGUGGuCCGC----------UGUGGcaua--GUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 117844 0.66 0.986251
Target:  5'- aGCACCGGcggccgcugacGCGGCgACCGcGUCAGaCgggGCg -3'
miRNA:   3'- -CGUGGUC-----------CGCUG-UGGCaUAGUC-Ga--UG- -5'
1620 3' -53.9 NC_001347.2 + 29917 0.66 0.979384
Target:  5'- gGCACCGgcagcccauccucguGGaGGCACCGcgaCAGCUACc -3'
miRNA:   3'- -CGUGGU---------------CCgCUGUGGCauaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 148369 0.66 0.978487
Target:  5'- -gACCGGcuGCGACAUCGcaaaaaCGGCUACa -3'
miRNA:   3'- cgUGGUC--CGCUGUGGCaua---GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 105712 0.67 0.964727
Target:  5'- cGUACgAGGagguaaaGGCuGCCGUGcagCAGCUGCa -3'
miRNA:   3'- -CGUGgUCCg------CUG-UGGCAUa--GUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 82653 0.67 0.964727
Target:  5'- gGCACCgAGGCcucuaGAagGCCGUAcCAGCUGa -3'
miRNA:   3'- -CGUGG-UCCG-----CUg-UGGCAUaGUCGAUg -5'
1620 3' -53.9 NC_001347.2 + 79653 0.67 0.961368
Target:  5'- aGCGCCAGGCGGCugauCUG---CAGCg-- -3'
miRNA:   3'- -CGUGGUCCGCUGu---GGCauaGUCGaug -5'
1620 3' -53.9 NC_001347.2 + 184985 0.67 0.964727
Target:  5'- gGCugCAGGCGGCagcggauacugGCCGUGaCuuGCUGg -3'
miRNA:   3'- -CGugGUCCGCUG-----------UGGCAUaGu-CGAUg -5'
1620 3' -53.9 NC_001347.2 + 143502 0.67 0.966012
Target:  5'- cGgACCGGGCGGCcuucuACCGUAcCGuccuccguuuggaucGCUGCg -3'
miRNA:   3'- -CgUGGUCCGCUG-----UGGCAUaGU---------------CGAUG- -5'
1620 3' -53.9 NC_001347.2 + 32218 0.67 0.964727
Target:  5'- cCGCCAGGaaCGAUaACCGUGUCcGCUcaACu -3'
miRNA:   3'- cGUGGUCC--GCUG-UGGCAUAGuCGA--UG- -5'
1620 3' -53.9 NC_001347.2 + 172306 0.67 0.96757
Target:  5'- aGCACCaggaggagggcaAGGCGACGCaGUGUCuguuccaGGCgGCa -3'
miRNA:   3'- -CGUGG------------UCCGCUGUGgCAUAG-------UCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 18419 0.67 0.967876
Target:  5'- cGCACCgAGGUGGaGCCGUugcUCAuGCUGg -3'
miRNA:   3'- -CGUGG-UCCGCUgUGGCAu--AGU-CGAUg -5'
1620 3' -53.9 NC_001347.2 + 208443 0.67 0.973566
Target:  5'- aGCGCCGucaacuCGAUGCCGg--CGGCUGCa -3'
miRNA:   3'- -CGUGGUcc----GCUGUGGCauaGUCGAUG- -5'
1620 3' -53.9 NC_001347.2 + 128439 0.67 0.973566
Target:  5'- gGCGCCugcuGCGugGCCGUcaagCGGCgcgACg -3'
miRNA:   3'- -CGUGGuc--CGCugUGGCAua--GUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 170401 0.67 0.967876
Target:  5'- cGCGCUGuGGCgcgagaugGACACCGUGUC-GCgGCa -3'
miRNA:   3'- -CGUGGU-CCG--------CUGUGGCAUAGuCGaUG- -5'
1620 3' -53.9 NC_001347.2 + 86917 0.66 0.978487
Target:  5'- cGC-CCAGGagacaGGCGCCGUAgcUCAuuUGCg -3'
miRNA:   3'- -CGuGGUCCg----CUGUGGCAU--AGUcgAUG- -5'
1620 3' -53.9 NC_001347.2 + 125824 0.66 0.978487
Target:  5'- gGCGCUGGGCcagcuGCAUCGUGcCGGCgcgACg -3'
miRNA:   3'- -CGUGGUCCGc----UGUGGCAUaGUCGa--UG- -5'
1620 3' -53.9 NC_001347.2 + 113540 0.66 0.986251
Target:  5'- cGUACC--GCGACGCCGaccCAcGCUGCa -3'
miRNA:   3'- -CGUGGucCGCUGUGGCauaGU-CGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.