miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 5' -58.2 NC_001347.2 + 59246 0.66 0.903547
Target:  5'- cCAaCGuGCaGACucGGCGGgGUCGCGUCAa -3'
miRNA:   3'- -GUcGC-CG-CUGu-CUGCCgCAGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 184384 0.66 0.897424
Target:  5'- -uGCGGgGAC-GACgGGCGUUGCGg-- -3'
miRNA:   3'- guCGCCgCUGuCUG-CCGCAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 175055 0.66 0.897424
Target:  5'- gAGCGGCGcCGucuuCGGCGU-GCAUCc -3'
miRNA:   3'- gUCGCCGCuGUcu--GCCGCAgCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 86832 0.66 0.897424
Target:  5'- aAGCGGCGAaAGGCG-CGUaCGCGaCAc -3'
miRNA:   3'- gUCGCCGCUgUCUGCcGCA-GCGUaGU- -5'
1620 5' -58.2 NC_001347.2 + 151877 0.66 0.891088
Target:  5'- aCGGCgcccGGUGucCGGACGGCGcCGCAg-- -3'
miRNA:   3'- -GUCG----CCGCu-GUCUGCCGCaGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 161654 0.66 0.891088
Target:  5'- -cGCGGCG-UGGACgcgccguuGGCGUCGCcUCu -3'
miRNA:   3'- guCGCCGCuGUCUG--------CCGCAGCGuAGu -5'
1620 5' -58.2 NC_001347.2 + 47129 0.66 0.891088
Target:  5'- gGGCGGCGGCGGcaAUGGC--CGCggCAg -3'
miRNA:   3'- gUCGCCGCUGUC--UGCCGcaGCGuaGU- -5'
1620 5' -58.2 NC_001347.2 + 170068 0.66 0.884544
Target:  5'- uGGCGGCGucguCAGuuGGCGUCccgaGUCGc -3'
miRNA:   3'- gUCGCCGCu---GUCugCCGCAGcg--UAGU- -5'
1620 5' -58.2 NC_001347.2 + 195316 0.67 0.877794
Target:  5'- gAGCGGC-ACGGG-GGCGUCGUg--- -3'
miRNA:   3'- gUCGCCGcUGUCUgCCGCAGCGuagu -5'
1620 5' -58.2 NC_001347.2 + 153225 0.67 0.870843
Target:  5'- -uGCaGCGugAGGCgcgGGCG-CGCGUCGg -3'
miRNA:   3'- guCGcCGCugUCUG---CCGCaGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 125291 0.67 0.870843
Target:  5'- cCGGUGGCGuCAGugGcGCaaccGUCGCAg-- -3'
miRNA:   3'- -GUCGCCGCuGUCugC-CG----CAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 73562 0.67 0.870843
Target:  5'- --cCGGCGACGGAUGgGCG-CGCAcgCGg -3'
miRNA:   3'- gucGCCGCUGUCUGC-CGCaGCGUa-GU- -5'
1620 5' -58.2 NC_001347.2 + 117475 0.67 0.863694
Target:  5'- aGGCGGCcagcaGACAGGCGGCGgcuuccaaAUCGg -3'
miRNA:   3'- gUCGCCG-----CUGUCUGCCGCagcg----UAGU- -5'
1620 5' -58.2 NC_001347.2 + 185466 0.67 0.863694
Target:  5'- aAGuuGCGcCGGACGGCGUUGUggCGc -3'
miRNA:   3'- gUCgcCGCuGUCUGCCGCAGCGuaGU- -5'
1620 5' -58.2 NC_001347.2 + 1962 0.67 0.856354
Target:  5'- gGGcCGGCGACggGGACGGCGgcggggaCGaCGUCc -3'
miRNA:   3'- gUC-GCCGCUG--UCUGCCGCa------GC-GUAGu -5'
1620 5' -58.2 NC_001347.2 + 107435 0.67 0.856354
Target:  5'- gCGGCGGaCGAgGGACuggaGGUG-CGCGUCc -3'
miRNA:   3'- -GUCGCC-GCUgUCUG----CCGCaGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 138832 0.67 0.856354
Target:  5'- aCGGUGGUGucuCAGACGuCGU-GCGUCAa -3'
miRNA:   3'- -GUCGCCGCu--GUCUGCcGCAgCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 198084 0.67 0.85561
Target:  5'- -cGCGGCGGuCGcGACGGUgacggucccgcucGUCGCGUUg -3'
miRNA:   3'- guCGCCGCU-GU-CUGCCG-------------CAGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 146985 0.67 0.848828
Target:  5'- cCAGCGGCGGuCuGGUGGUGUUcuggcaagGCAUCAa -3'
miRNA:   3'- -GUCGCCGCU-GuCUGCCGCAG--------CGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 109472 0.67 0.841121
Target:  5'- cCGGCGGCGGCGccAUGGCGggCGCcUCc -3'
miRNA:   3'- -GUCGCCGCUGUc-UGCCGCa-GCGuAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.