miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 5' -58.2 NC_001347.2 + 161132 0.67 0.841121
Target:  5'- aAGCauaGGCGacGCAGGCGGuCG-CGCAUUAu -3'
miRNA:   3'- gUCG---CCGC--UGUCUGCC-GCaGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 116771 0.67 0.84034
Target:  5'- gAGCuGCGACAGcgugaccGCGGgGUCGCGc-- -3'
miRNA:   3'- gUCGcCGCUGUC-------UGCCgCAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 173541 0.68 0.833239
Target:  5'- uGGCGGCGGCGGuggUGGCGgcaGCcUCu -3'
miRNA:   3'- gUCGCCGCUGUCu--GCCGCag-CGuAGu -5'
1620 5' -58.2 NC_001347.2 + 101163 0.68 0.82519
Target:  5'- cCAGCGGCuuGGCcgcGGCGGCGcaCGcCAUCAa -3'
miRNA:   3'- -GUCGCCG--CUGu--CUGCCGCa-GC-GUAGU- -5'
1620 5' -58.2 NC_001347.2 + 174781 0.68 0.816978
Target:  5'- cCGGCGGCGACG--UGG-GUCGCGaguUCAu -3'
miRNA:   3'- -GUCGCCGCUGUcuGCCgCAGCGU---AGU- -5'
1620 5' -58.2 NC_001347.2 + 97915 0.68 0.816978
Target:  5'- gGGCGGCGGCGGuaacacACGGCGaaucagUUGCGaCAg -3'
miRNA:   3'- gUCGCCGCUGUC------UGCCGC------AGCGUaGU- -5'
1620 5' -58.2 NC_001347.2 + 1802 0.68 0.816149
Target:  5'- gGGCGcGUGGCAGGagcUGGCGcaguacgagccguUCGCGUCGg -3'
miRNA:   3'- gUCGC-CGCUGUCU---GCCGC-------------AGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 208098 0.68 0.800101
Target:  5'- gCAGaugGGCGcACcGACGGCGgagcCGCGUCGc -3'
miRNA:   3'- -GUCg--CCGC-UGuCUGCCGCa---GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 174221 0.68 0.800101
Target:  5'- aCGGCaGCGucACAGAgGGCGUucggacgaccucCGCGUCGg -3'
miRNA:   3'- -GUCGcCGC--UGUCUgCCGCA------------GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 156808 0.68 0.791449
Target:  5'- gCAGCGGCGGgccaggacguCGGAgGGUccgCGCGUCGg -3'
miRNA:   3'- -GUCGCCGCU----------GUCUgCCGca-GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 38017 0.69 0.782665
Target:  5'- gCGGCcucGGCGGCGGGCGcCGacUCGCGUCc -3'
miRNA:   3'- -GUCG---CCGCUGUCUGCcGC--AGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 182206 0.69 0.782665
Target:  5'- -uGCgGGUGGCGGGCuGCGUCGCcuUCGg -3'
miRNA:   3'- guCG-CCGCUGUCUGcCGCAGCGu-AGU- -5'
1620 5' -58.2 NC_001347.2 + 63825 0.69 0.773756
Target:  5'- gCGGCGGCGGC-GAUGGCGggGCu--- -3'
miRNA:   3'- -GUCGCCGCUGuCUGCCGCagCGuagu -5'
1620 5' -58.2 NC_001347.2 + 220418 0.69 0.773756
Target:  5'- ---aGGUGACAGAUGuGUGUgGCGUCGu -3'
miRNA:   3'- gucgCCGCUGUCUGC-CGCAgCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 113077 0.69 0.771061
Target:  5'- aCGGCGGUGAuuccgcgggaagaaCGGACGGCGaCGCu--- -3'
miRNA:   3'- -GUCGCCGCU--------------GUCUGCCGCaGCGuagu -5'
1620 5' -58.2 NC_001347.2 + 128460 0.69 0.764732
Target:  5'- aAGCGGCG-C-GACGGCGcgCGCAcgCGg -3'
miRNA:   3'- gUCGCCGCuGuCUGCCGCa-GCGUa-GU- -5'
1620 5' -58.2 NC_001347.2 + 139325 0.69 0.755599
Target:  5'- uGGCGGCGuugugcgcgGCGGugGGCuGUCagGCGUCc -3'
miRNA:   3'- gUCGCCGC---------UGUCugCCG-CAG--CGUAGu -5'
1620 5' -58.2 NC_001347.2 + 44032 0.69 0.746366
Target:  5'- gCGGUGGCGACGGcaGCGGUGguggCGCu--- -3'
miRNA:   3'- -GUCGCCGCUGUC--UGCCGCa---GCGuagu -5'
1620 5' -58.2 NC_001347.2 + 90219 0.69 0.746366
Target:  5'- aAGaCGGCGu--GGCGGCGUCGUuuuUCGg -3'
miRNA:   3'- gUC-GCCGCuguCUGCCGCAGCGu--AGU- -5'
1620 5' -58.2 NC_001347.2 + 168534 0.7 0.718148
Target:  5'- uCGGCGGCGuACAG-CGG-GUCGCGc-- -3'
miRNA:   3'- -GUCGCCGC-UGUCuGCCgCAGCGUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.