miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 5' -58.2 NC_001347.2 + 1802 0.68 0.816149
Target:  5'- gGGCGcGUGGCAGGagcUGGCGcaguacgagccguUCGCGUCGg -3'
miRNA:   3'- gUCGC-CGCUGUCU---GCCGC-------------AGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 1962 0.67 0.856354
Target:  5'- gGGcCGGCGACggGGACGGCGgcggggaCGaCGUCc -3'
miRNA:   3'- gUC-GCCGCUG--UCUGCCGCa------GC-GUAGu -5'
1620 5' -58.2 NC_001347.2 + 37168 0.7 0.698984
Target:  5'- gGGCGGUGGCGGccuUGGCgGUCGgGUCu -3'
miRNA:   3'- gUCGCCGCUGUCu--GCCG-CAGCgUAGu -5'
1620 5' -58.2 NC_001347.2 + 38017 0.69 0.782665
Target:  5'- gCGGCcucGGCGGCGGGCGcCGacUCGCGUCc -3'
miRNA:   3'- -GUCG---CCGCUGUCUGCcGC--AGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 44032 0.69 0.746366
Target:  5'- gCGGUGGCGACGGcaGCGGUGguggCGCu--- -3'
miRNA:   3'- -GUCGCCGCUGUC--UGCCGCa---GCGuagu -5'
1620 5' -58.2 NC_001347.2 + 47129 0.66 0.891088
Target:  5'- gGGCGGCGGCGGcaAUGGC--CGCggCAg -3'
miRNA:   3'- gUCGCCGCUGUC--UGCCGcaGCGuaGU- -5'
1620 5' -58.2 NC_001347.2 + 59246 0.66 0.903547
Target:  5'- cCAaCGuGCaGACucGGCGGgGUCGCGUCAa -3'
miRNA:   3'- -GUcGC-CG-CUGu-CUGCCgCAGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 63825 0.69 0.773756
Target:  5'- gCGGCGGCGGC-GAUGGCGggGCu--- -3'
miRNA:   3'- -GUCGCCGCUGuCUGCCGCagCGuagu -5'
1620 5' -58.2 NC_001347.2 + 65724 0.7 0.679613
Target:  5'- uGGCGGCGGUGGAgGGCG-CGCggCAa -3'
miRNA:   3'- gUCGCCGCUGUCUgCCGCaGCGuaGU- -5'
1620 5' -58.2 NC_001347.2 + 73562 0.67 0.870843
Target:  5'- --cCGGCGACGGAUGgGCG-CGCAcgCGg -3'
miRNA:   3'- gucGCCGCUGUCUGC-CGCaGCGUa-GU- -5'
1620 5' -58.2 NC_001347.2 + 75409 0.74 0.478007
Target:  5'- gAGCGGCGGCcguGGCGGCGgcagcggCGCAgagCGa -3'
miRNA:   3'- gUCGCCGCUGu--CUGCCGCa------GCGUa--GU- -5'
1620 5' -58.2 NC_001347.2 + 77080 0.7 0.707637
Target:  5'- gCAGCGGCGGCAGAagaggaGGCGgaggagugaacggUCGuCGUUg -3'
miRNA:   3'- -GUCGCCGCUGUCUg-----CCGC-------------AGC-GUAGu -5'
1620 5' -58.2 NC_001347.2 + 86832 0.66 0.897424
Target:  5'- aAGCGGCGAaAGGCG-CGUaCGCGaCAc -3'
miRNA:   3'- gUCGCCGCUgUCUGCcGCA-GCGUaGU- -5'
1620 5' -58.2 NC_001347.2 + 90219 0.69 0.746366
Target:  5'- aAGaCGGCGu--GGCGGCGUCGUuuuUCGg -3'
miRNA:   3'- gUC-GCCGCuguCUGCCGCAGCGu--AGU- -5'
1620 5' -58.2 NC_001347.2 + 97915 0.68 0.816978
Target:  5'- gGGCGGCGGCGGuaacacACGGCGaaucagUUGCGaCAg -3'
miRNA:   3'- gUCGCCGCUGUC------UGCCGC------AGCGUaGU- -5'
1620 5' -58.2 NC_001347.2 + 98053 0.7 0.679613
Target:  5'- -cGCGGCGGCAGcggccGCGGCuUC-CAUCAu -3'
miRNA:   3'- guCGCCGCUGUC-----UGCCGcAGcGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 101163 0.68 0.82519
Target:  5'- cCAGCGGCuuGGCcgcGGCGGCGcaCGcCAUCAa -3'
miRNA:   3'- -GUCGCCG--CUGu--CUGCCGCa-GC-GUAGU- -5'
1620 5' -58.2 NC_001347.2 + 106238 0.74 0.505524
Target:  5'- aGGCGGCGGCGG-UGGCGUUgGCAgCAa -3'
miRNA:   3'- gUCGCCGCUGUCuGCCGCAG-CGUaGU- -5'
1620 5' -58.2 NC_001347.2 + 107435 0.67 0.856354
Target:  5'- gCGGCGGaCGAgGGACuggaGGUG-CGCGUCc -3'
miRNA:   3'- -GUCGCC-GCUgUCUG----CCGCaGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 108156 0.72 0.572079
Target:  5'- gCGGCGGCcGCAGAgGGCG-CGCcgCu -3'
miRNA:   3'- -GUCGCCGcUGUCUgCCGCaGCGuaGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.