miRNA display CGI


Results 41 - 60 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 5' -58.2 NC_001347.2 + 163311 0.71 0.660099
Target:  5'- -cGCGGCGACucgucGCGcGCcaGUCGCAUCAc -3'
miRNA:   3'- guCGCCGCUGuc---UGC-CG--CAGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 168534 0.7 0.718148
Target:  5'- uCGGCGGCGuACAG-CGG-GUCGCGc-- -3'
miRNA:   3'- -GUCGCCGC-UGUCuGCCgCAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 170068 0.66 0.884544
Target:  5'- uGGCGGCGucguCAGuuGGCGUCccgaGUCGc -3'
miRNA:   3'- gUCGCCGCu---GUCugCCGCAGcg--UAGU- -5'
1620 5' -58.2 NC_001347.2 + 173541 0.68 0.833239
Target:  5'- uGGCGGCGGCGGuggUGGCGgcaGCcUCu -3'
miRNA:   3'- gUCGCCGCUGUCu--GCCGCag-CGuAGu -5'
1620 5' -58.2 NC_001347.2 + 173731 0.7 0.708595
Target:  5'- gCAGCGGUGGCGG-CGGCGgUG-AUCAc -3'
miRNA:   3'- -GUCGCCGCUGUCuGCCGCaGCgUAGU- -5'
1620 5' -58.2 NC_001347.2 + 173831 0.71 0.659121
Target:  5'- gGGCGGCGGCggaggaggaggAGGCGGCGguuuggaUCGCAa-- -3'
miRNA:   3'- gUCGCCGCUG-----------UCUGCCGC-------AGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 174221 0.68 0.800101
Target:  5'- aCGGCaGCGucACAGAgGGCGUucggacgaccucCGCGUCGg -3'
miRNA:   3'- -GUCGcCGC--UGUCUgCCGCA------------GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 174781 0.68 0.816978
Target:  5'- cCGGCGGCGACG--UGG-GUCGCGaguUCAu -3'
miRNA:   3'- -GUCGCCGCUGUcuGCCgCAGCGU---AGU- -5'
1620 5' -58.2 NC_001347.2 + 175055 0.66 0.897424
Target:  5'- gAGCGGCGcCGucuuCGGCGU-GCAUCc -3'
miRNA:   3'- gUCGCCGCuGUcu--GCCGCAgCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 180052 0.71 0.650307
Target:  5'- -uGUGGCGGCGGGCaGCaUCGCGUUg -3'
miRNA:   3'- guCGCCGCUGUCUGcCGcAGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 182206 0.69 0.782665
Target:  5'- -uGCgGGUGGCGGGCuGCGUCGCcuUCGg -3'
miRNA:   3'- guCG-CCGCUGUCUGcCGCAGCGu-AGU- -5'
1620 5' -58.2 NC_001347.2 + 184384 0.66 0.897424
Target:  5'- -uGCGGgGAC-GACgGGCGUUGCGg-- -3'
miRNA:   3'- guCGCCgCUGuCUG-CCGCAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 185466 0.67 0.863694
Target:  5'- aAGuuGCGcCGGACGGCGUUGUggCGc -3'
miRNA:   3'- gUCgcCGCuGUCUGCCGCAGCGuaGU- -5'
1620 5' -58.2 NC_001347.2 + 191991 0.8 0.215201
Target:  5'- gCGGCGGCGACGGACGGCGgcgGUAaCAa -3'
miRNA:   3'- -GUCGCCGCUGUCUGCCGCag-CGUaGU- -5'
1620 5' -58.2 NC_001347.2 + 192043 0.71 0.650307
Target:  5'- gCAGCGGCGAC-GACGGUGgcgGCGa-- -3'
miRNA:   3'- -GUCGCCGCUGuCUGCCGCag-CGUagu -5'
1620 5' -58.2 NC_001347.2 + 195316 0.67 0.877794
Target:  5'- gAGCGGC-ACGGG-GGCGUCGUg--- -3'
miRNA:   3'- gUCGCCGcUGUCUgCCGCAGCGuagu -5'
1620 5' -58.2 NC_001347.2 + 198084 0.67 0.85561
Target:  5'- -cGCGGCGGuCGcGACGGUgacggucccgcucGUCGCGUUg -3'
miRNA:   3'- guCGCCGCU-GU-CUGCCG-------------CAGCGUAGu -5'
1620 5' -58.2 NC_001347.2 + 208098 0.68 0.800101
Target:  5'- gCAGaugGGCGcACcGACGGCGgagcCGCGUCGc -3'
miRNA:   3'- -GUCg--CCGC-UGuCUGCCGCa---GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 210492 0.73 0.562411
Target:  5'- aAGCGGCGGuCGGuccaggucaACGGCGUuucgcCGCGUCAu -3'
miRNA:   3'- gUCGCCGCU-GUC---------UGCCGCA-----GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 220418 0.69 0.773756
Target:  5'- ---aGGUGACAGAUGuGUGUgGCGUCGu -3'
miRNA:   3'- gucgCCGCUGUCUGC-CGCAgCGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.