miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1620 5' -58.2 NC_001347.2 + 161654 0.66 0.891088
Target:  5'- -cGCGGCG-UGGACgcgccguuGGCGUCGCcUCu -3'
miRNA:   3'- guCGCCGCuGUCUG--------CCGCAGCGuAGu -5'
1620 5' -58.2 NC_001347.2 + 161132 0.67 0.841121
Target:  5'- aAGCauaGGCGacGCAGGCGGuCG-CGCAUUAu -3'
miRNA:   3'- gUCG---CCGC--UGUCUGCC-GCaGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 156808 0.68 0.791449
Target:  5'- gCAGCGGCGGgccaggacguCGGAgGGUccgCGCGUCGg -3'
miRNA:   3'- -GUCGCCGCU----------GUCUgCCGca-GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 153225 0.67 0.870843
Target:  5'- -uGCaGCGugAGGCgcgGGCG-CGCGUCGg -3'
miRNA:   3'- guCGcCGCugUCUG---CCGCaGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 151877 0.66 0.891088
Target:  5'- aCGGCgcccGGUGucCGGACGGCGcCGCAg-- -3'
miRNA:   3'- -GUCG----CCGCu-GUCUGCCGCaGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 148598 0.71 0.66987
Target:  5'- gAGCGGCGGCGugaccGGCGGUgcgGUCGCGg-- -3'
miRNA:   3'- gUCGCCGCUGU-----CUGCCG---CAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 146985 0.67 0.848828
Target:  5'- cCAGCGGCGGuCuGGUGGUGUUcuggcaagGCAUCAa -3'
miRNA:   3'- -GUCGCCGCU-GuCUGCCGCAG--------CGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 142999 0.7 0.679613
Target:  5'- cCGGCGGCGGCGGugGuggaggagguuGCGcCGCAa-- -3'
miRNA:   3'- -GUCGCCGCUGUCugC-----------CGCaGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 142803 1.08 0.003302
Target:  5'- aCAGCGGCGACAGACGGCGUCGCAUCAu -3'
miRNA:   3'- -GUCGCCGCUGUCUGCCGCAGCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 142427 0.78 0.303394
Target:  5'- cCAGUGGCGuCGGcGCGGCGUCcgGCGUCGg -3'
miRNA:   3'- -GUCGCCGCuGUC-UGCCGCAG--CGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 139463 0.71 0.66987
Target:  5'- aCGGCGGCGA--GGCGGUG-CGCGUg- -3'
miRNA:   3'- -GUCGCCGCUguCUGCCGCaGCGUAgu -5'
1620 5' -58.2 NC_001347.2 + 139325 0.69 0.755599
Target:  5'- uGGCGGCGuugugcgcgGCGGugGGCuGUCagGCGUCc -3'
miRNA:   3'- gUCGCCGC---------UGUCugCCG-CAG--CGUAGu -5'
1620 5' -58.2 NC_001347.2 + 138832 0.67 0.856354
Target:  5'- aCGGUGGUGucuCAGACGuCGU-GCGUCAa -3'
miRNA:   3'- -GUCGCCGCu--GUCUGCcGCAgCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 128460 0.69 0.764732
Target:  5'- aAGCGGCG-C-GACGGCGcgCGCAcgCGg -3'
miRNA:   3'- gUCGCCGCuGuCUGCCGCa-GCGUa-GU- -5'
1620 5' -58.2 NC_001347.2 + 125291 0.67 0.870843
Target:  5'- cCGGUGGCGuCAGugGcGCaaccGUCGCAg-- -3'
miRNA:   3'- -GUCGCCGCuGUCugC-CG----CAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 117848 0.7 0.708595
Target:  5'- cCGGCGGCcGCuGacGCGGCGacCGCGUCAg -3'
miRNA:   3'- -GUCGCCGcUGuC--UGCCGCa-GCGUAGU- -5'
1620 5' -58.2 NC_001347.2 + 117475 0.67 0.863694
Target:  5'- aGGCGGCcagcaGACAGGCGGCGgcuuccaaAUCGg -3'
miRNA:   3'- gUCGCCG-----CUGUCUGCCGCagcg----UAGU- -5'
1620 5' -58.2 NC_001347.2 + 116771 0.67 0.84034
Target:  5'- gAGCuGCGACAGcgugaccGCGGgGUCGCGc-- -3'
miRNA:   3'- gUCGcCGCUGUC-------UGCCgCAGCGUagu -5'
1620 5' -58.2 NC_001347.2 + 113077 0.69 0.771061
Target:  5'- aCGGCGGUGAuuccgcgggaagaaCGGACGGCGaCGCu--- -3'
miRNA:   3'- -GUCGCCGCU--------------GUCUGCCGCaGCGuagu -5'
1620 5' -58.2 NC_001347.2 + 109472 0.67 0.841121
Target:  5'- cCGGCGGCGGCGccAUGGCGggCGCcUCc -3'
miRNA:   3'- -GUCGCCGCUGUc-UGCCGCa-GCGuAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.