Results 41 - 60 of 60 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 151877 | 0.66 | 0.891088 |
Target: 5'- aCGGCgcccGGUGucCGGACGGCGcCGCAg-- -3' miRNA: 3'- -GUCG----CCGCu-GUCUGCCGCaGCGUagu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 161654 | 0.66 | 0.891088 |
Target: 5'- -cGCGGCG-UGGACgcgccguuGGCGUCGCcUCu -3' miRNA: 3'- guCGCCGCuGUCUG--------CCGCAGCGuAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 47129 | 0.66 | 0.891088 |
Target: 5'- gGGCGGCGGCGGcaAUGGC--CGCggCAg -3' miRNA: 3'- gUCGCCGCUGUC--UGCCGcaGCGuaGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 59246 | 0.66 | 0.903547 |
Target: 5'- cCAaCGuGCaGACucGGCGGgGUCGCGUCAa -3' miRNA: 3'- -GUcGC-CG-CUGu-CUGCCgCAGCGUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 138832 | 0.67 | 0.856354 |
Target: 5'- aCGGUGGUGucuCAGACGuCGU-GCGUCAa -3' miRNA: 3'- -GUCGCCGCu--GUCUGCcGCAgCGUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 107435 | 0.67 | 0.856354 |
Target: 5'- gCGGCGGaCGAgGGACuggaGGUG-CGCGUCc -3' miRNA: 3'- -GUCGCC-GCUgUCUG----CCGCaGCGUAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 38017 | 0.69 | 0.782665 |
Target: 5'- gCGGCcucGGCGGCGGGCGcCGacUCGCGUCc -3' miRNA: 3'- -GUCG---CCGCUGUCUGCcGC--AGCGUAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 208098 | 0.68 | 0.800101 |
Target: 5'- gCAGaugGGCGcACcGACGGCGgagcCGCGUCGc -3' miRNA: 3'- -GUCg--CCGC-UGuCUGCCGCa---GCGUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 1802 | 0.68 | 0.816149 |
Target: 5'- gGGCGcGUGGCAGGagcUGGCGcaguacgagccguUCGCGUCGg -3' miRNA: 3'- gUCGC-CGCUGUCU---GCCGC-------------AGCGUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 174781 | 0.68 | 0.816978 |
Target: 5'- cCGGCGGCGACG--UGG-GUCGCGaguUCAu -3' miRNA: 3'- -GUCGCCGCUGUcuGCCgCAGCGU---AGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 97915 | 0.68 | 0.816978 |
Target: 5'- gGGCGGCGGCGGuaacacACGGCGaaucagUUGCGaCAg -3' miRNA: 3'- gUCGCCGCUGUC------UGCCGC------AGCGUaGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 101163 | 0.68 | 0.82519 |
Target: 5'- cCAGCGGCuuGGCcgcGGCGGCGcaCGcCAUCAa -3' miRNA: 3'- -GUCGCCG--CUGu--CUGCCGCa-GC-GUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 116771 | 0.67 | 0.84034 |
Target: 5'- gAGCuGCGACAGcgugaccGCGGgGUCGCGc-- -3' miRNA: 3'- gUCGcCGCUGUC-------UGCCgCAGCGUagu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 173541 | 0.68 | 0.833239 |
Target: 5'- uGGCGGCGGCGGuggUGGCGgcaGCcUCu -3' miRNA: 3'- gUCGCCGCUGUCu--GCCGCag-CGuAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 109472 | 0.67 | 0.841121 |
Target: 5'- cCGGCGGCGGCGccAUGGCGggCGCcUCc -3' miRNA: 3'- -GUCGCCGCUGUc-UGCCGCa-GCGuAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 146985 | 0.67 | 0.848828 |
Target: 5'- cCAGCGGCGGuCuGGUGGUGUUcuggcaagGCAUCAa -3' miRNA: 3'- -GUCGCCGCU-GuCUGCCGCAG--------CGUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 161132 | 0.67 | 0.841121 |
Target: 5'- aAGCauaGGCGacGCAGGCGGuCG-CGCAUUAu -3' miRNA: 3'- gUCG---CCGC--UGUCUGCC-GCaGCGUAGU- -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 198084 | 0.67 | 0.85561 |
Target: 5'- -cGCGGCGGuCGcGACGGUgacggucccgcucGUCGCGUUg -3' miRNA: 3'- guCGCCGCU-GU-CUGCCG-------------CAGCGUAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 1962 | 0.67 | 0.856354 |
Target: 5'- gGGcCGGCGACggGGACGGCGgcggggaCGaCGUCc -3' miRNA: 3'- gUC-GCCGCUG--UCUGCCGCa------GC-GUAGu -5' |
|||||||
1620 | 5' | -58.2 | NC_001347.2 | + | 184384 | 0.66 | 0.897424 |
Target: 5'- -uGCGGgGAC-GACgGGCGUUGCGg-- -3' miRNA: 3'- guCGCCgCUGuCUG-CCGCAGCGUagu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home