miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 139120 0.66 0.752474
Target:  5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3'
miRNA:   3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 122707 0.66 0.752474
Target:  5'- uGUCuGCGGGuGCUgaGCGUUcuGGCGUCg -3'
miRNA:   3'- -CAG-CGCCCuCGGg-CGCAGucUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 35457 0.66 0.752474
Target:  5'- cGUCGUGcuggucGGAGCCCGCGgaaCGGuGUacgguuucuGCCu -3'
miRNA:   3'- -CAGCGC------CCUCGGGCGCa--GUCuCG---------CGG- -5'
16200 5' -62.6 NC_004065.1 + 99414 0.66 0.752474
Target:  5'- cUCGCagcaGGGGCCCgaGCGgCAGA-CGCCg -3'
miRNA:   3'- cAGCGc---CCUCGGG--CGCaGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 169256 0.66 0.743504
Target:  5'- --gGCGGGAGgCCGCGgccCuGuGCgGCCu -3'
miRNA:   3'- cagCGCCCUCgGGCGCa--GuCuCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 153952 0.66 0.743504
Target:  5'- -cCGC-GGAGCCUGCGaCuugucuGCGCCg -3'
miRNA:   3'- caGCGcCCUCGGGCGCaGucu---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145309 0.66 0.743504
Target:  5'- cGUCGCcgcuucGGGuGCCgaGCGacacucgacaCAGGGCGCCu -3'
miRNA:   3'- -CAGCG------CCCuCGGg-CGCa---------GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145778 0.66 0.740797
Target:  5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3'
miRNA:   3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5'
16200 5' -62.6 NC_004065.1 + 117407 0.66 0.734451
Target:  5'- -gCGCGcuGGGCUCGCGgcgCGGAGUggcaGCCg -3'
miRNA:   3'- caGCGCc-CUCGGGCGCa--GUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 177483 0.66 0.734451
Target:  5'- --gGCGGGGGCgCaCGgCGGGGcCGCCg -3'
miRNA:   3'- cagCGCCCUCGgGcGCaGUCUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 189865 0.66 0.734451
Target:  5'- -cCGCGaGGGGUuuGCugccGUCGGcAGCGUCu -3'
miRNA:   3'- caGCGC-CCUCGggCG----CAGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 169849 0.66 0.733542
Target:  5'- -cCGUGcGGGCCaGCGUCGaccugugcauggcGGGCGCCg -3'
miRNA:   3'- caGCGCcCUCGGgCGCAGU-------------CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 76389 0.66 0.725321
Target:  5'- -cCGCGGauGAGCUCGCcgccGUCcgAGuGGCGCCg -3'
miRNA:   3'- caGCGCC--CUCGGGCG----CAG--UC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 3787 0.66 0.725321
Target:  5'- uUCGCGGGcAGCCUGgCGU----GUGCCg -3'
miRNA:   3'- cAGCGCCC-UCGGGC-GCAgucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 115805 0.66 0.725321
Target:  5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3'
miRNA:   3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 114576 0.66 0.725321
Target:  5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3'
miRNA:   3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 139902 0.66 0.725321
Target:  5'- -cCGCGGG-GCCUcCGgcCGGcGGCGCCa -3'
miRNA:   3'- caGCGCCCuCGGGcGCa-GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 200315 0.66 0.725321
Target:  5'- -aCGCaGGcagagguaccAGCCCGU--CGGGGCGCCg -3'
miRNA:   3'- caGCGcCC----------UCGGGCGcaGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34239 0.66 0.725321
Target:  5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3'
miRNA:   3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 38422 0.66 0.724404
Target:  5'- uUCGCGGGAGaggGCGUCuacGAcgacgguuuucgcGCGCCg -3'
miRNA:   3'- cAGCGCCCUCgggCGCAGu--CU-------------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.