miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 115805 0.66 0.725321
Target:  5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3'
miRNA:   3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 117407 0.66 0.734451
Target:  5'- -gCGCGcuGGGCUCGCGgcgCGGAGUggcaGCCg -3'
miRNA:   3'- caGCGCc-CUCGGGCGCa--GUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 34239 0.66 0.725321
Target:  5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3'
miRNA:   3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145778 0.66 0.740797
Target:  5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3'
miRNA:   3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5'
16200 5' -62.6 NC_004065.1 + 3787 0.66 0.725321
Target:  5'- uUCGCGGGcAGCCUGgCGU----GUGCCg -3'
miRNA:   3'- cAGCGCCC-UCGGGC-GCAgucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 139902 0.66 0.725321
Target:  5'- -cCGCGGG-GCCUcCGgcCGGcGGCGCCa -3'
miRNA:   3'- caGCGCCCuCGGGcGCa-GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34536 0.66 0.716123
Target:  5'- -aCGCGGGcuCCCGCGacagCgAGAGCGaCUc -3'
miRNA:   3'- caGCGCCCucGGGCGCa---G-UCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 68583 0.66 0.716123
Target:  5'- -aCGCGGcGG-CgGCGaucCAGAGCGCCg -3'
miRNA:   3'- caGCGCCcUCgGgCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 74822 0.67 0.688184
Target:  5'- -gCGUGGaGAcGCCCGgGUCgggaccgaGGGGCGCa -3'
miRNA:   3'- caGCGCC-CU-CGGGCgCAG--------UCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 126255 0.67 0.697547
Target:  5'- --gGCGGaucGAGCCgcccagCGCGuUCAGcAGCGCCu -3'
miRNA:   3'- cagCGCC---CUCGG------GCGC-AGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 35943 0.67 0.697547
Target:  5'- uGUCGCGGccGCagGuCGUCGGAcucGCGCCg -3'
miRNA:   3'- -CAGCGCCcuCGggC-GCAGUCU---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 125771 0.67 0.697547
Target:  5'- aUCGCGGGguGGCagaGaGUCuuGAGCGCCu -3'
miRNA:   3'- cAGCGCCC--UCGgg-CgCAGu-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 104315 0.67 0.649455
Target:  5'- --gGCGGGcccGCCCcagggggaugaucGgGUCAGGGCGCUc -3'
miRNA:   3'- cagCGCCCu--CGGG-------------CgCAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 225370 0.67 0.659885
Target:  5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3'
miRNA:   3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 66625 0.67 0.650404
Target:  5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3'
miRNA:   3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 184907 0.67 0.650404
Target:  5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3'
miRNA:   3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 53264 0.67 0.650404
Target:  5'- -gCGCGaGGAGucuCCCGCGUCAcuGAuuCGCCa -3'
miRNA:   3'- caGCGC-CCUC---GGGCGCAGU--CUc-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 71478 0.67 0.669346
Target:  5'- cUCGCGauGAGCgUGCGagAGAuGCGCCg -3'
miRNA:   3'- cAGCGCc-CUCGgGCGCagUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 137961 0.67 0.669346
Target:  5'- -gCGCGGcccuccGAGCgCGCGUgAGAugccucgagcGCGCCa -3'
miRNA:   3'- caGCGCC------CUCGgGCGCAgUCU----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 33615 0.67 0.649455
Target:  5'- -cUGCGGGccggcauggccaaGGCCauCGCGuUCGGGGCGCg -3'
miRNA:   3'- caGCGCCC-------------UCGG--GCGC-AGUCUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.