Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 101822 | 0.67 | 0.66651 |
Target: 5'- gGUgGCGGGAcuggcacuaguaauGCUCGCG--GGGGCGUCg -3' miRNA: 3'- -CAgCGCCCU--------------CGGGCGCagUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 136856 | 0.67 | 0.669346 |
Target: 5'- uGUCGCGGGAcggauGCCgcggucaGCGUCAGAa-GCUg -3' miRNA: 3'- -CAGCGCCCU-----CGGg------CGCAGUCUcgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 68165 | 0.67 | 0.669346 |
Target: 5'- aUCGCGGcGGcGCgCGCGaCGGAGCuGUCg -3' miRNA: 3'- cAGCGCC-CU-CGgGCGCaGUCUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 184907 | 0.67 | 0.650404 |
Target: 5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3' miRNA: 3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 68424 | 0.67 | 0.669346 |
Target: 5'- -cCG-GGGAGCgCGCGUUcGuGUGCCu -3' miRNA: 3'- caGCgCCCUCGgGCGCAGuCuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 74822 | 0.67 | 0.688184 |
Target: 5'- -gCGUGGaGAcGCCCGgGUCgggaccgaGGGGCGCa -3' miRNA: 3'- caGCGCC-CU-CGGGCgCAG--------UCUCGCGg -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 162254 | 0.67 | 0.654198 |
Target: 5'- aGUC-UGGGcGCCCGCGccguucgucacgccgUCGGAcgcgGCGCCg -3' miRNA: 3'- -CAGcGCCCuCGGGCGC---------------AGUCU----CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 163464 | 0.68 | 0.621913 |
Target: 5'- uUCGaUGGGuAGCUCGagcucCGUCGGcGGCGCCg -3' miRNA: 3'- cAGC-GCCC-UCGGGC-----GCAGUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 135674 | 0.68 | 0.593481 |
Target: 5'- cGUCG-GGGGGCUCGCG-CAGAG-GUUc -3' miRNA: 3'- -CAGCgCCCUCGGGCGCaGUCUCgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 46290 | 0.68 | 0.593481 |
Target: 5'- -cCGUGGGcgaccuGGaCCUGUcUCAGGGCGCCu -3' miRNA: 3'- caGCGCCC------UC-GGGCGcAGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 119513 | 0.68 | 0.612421 |
Target: 5'- -gCGCGGcGAGCCUGUcgacauccuuGUcCGGGGCgGCCg -3' miRNA: 3'- caGCGCC-CUCGGGCG----------CA-GUCUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 159753 | 0.68 | 0.619064 |
Target: 5'- -cCGCGGGGuugcGCCaguucuuucgcaugUGCGUCAGGGCGgUCa -3' miRNA: 3'- caGCGCCCU----CGG--------------GCGCAGUCUCGC-GG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 24972 | 0.68 | 0.640911 |
Target: 5'- gGUCGUGGGugggcgucccucGGCCUuuuGUGUguGGGCGUCc -3' miRNA: 3'- -CAGCGCCC------------UCGGG---CGCAguCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 127320 | 0.68 | 0.640911 |
Target: 5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3' miRNA: 3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 64875 | 0.68 | 0.640911 |
Target: 5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3' miRNA: 3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 122720 | 0.68 | 0.637112 |
Target: 5'- uGUUGCGGaugguguagcacuGGCCgUGCGUCGG-GCGCCc -3' miRNA: 3'- -CAGCGCCc------------UCGG-GCGCAGUCuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 4388 | 0.68 | 0.602942 |
Target: 5'- --gGCGGGAGCCggaGUGcuguUCGGAGCggugGCCa -3' miRNA: 3'- cagCGCCCUCGGg--CGC----AGUCUCG----CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 90633 | 0.68 | 0.593481 |
Target: 5'- -gCGCGGGccgucGCgaccccaucagaCCGCGUCgucggugguggAGAGCGCCg -3' miRNA: 3'- caGCGCCCu----CG------------GGCGCAG-----------UCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 56560 | 0.68 | 0.593481 |
Target: 5'- -cCGCuucGGuGCUgGCGUC-GAGCGCCg -3' miRNA: 3'- caGCGc--CCuCGGgCGCAGuCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 163360 | 0.68 | 0.61337 |
Target: 5'- -cUGUgGGGGGCCCgguggcucuccaucaGCGUCAGcgcguccgccacgcAGCGCCg -3' miRNA: 3'- caGCG-CCCUCGGG---------------CGCAGUC--------------UCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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