miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 156289 0.69 0.555936
Target:  5'- --gGCGGGAGUagCgGCGgcagCAGuGGCGCCa -3'
miRNA:   3'- cagCGCCCUCG--GgCGCa---GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 211904 0.69 0.555936
Target:  5'- -cCGCGGcGGGCCCggagguucuuccGCGaCAGAGaUGCCg -3'
miRNA:   3'- caGCGCC-CUCGGG------------CGCaGUCUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 138316 0.69 0.528233
Target:  5'- -aCGCGGGAGCUCGCGgaCAucGUgGCCg -3'
miRNA:   3'- caGCGCCCUCGGGCGCa-GUcuCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 123672 0.69 0.537415
Target:  5'- -aCGUGGcGcgcuGCCCGUG-CAGcAGCGCCg -3'
miRNA:   3'- caGCGCC-Cu---CGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 142741 0.69 0.574638
Target:  5'- -aUGgGGGAuaUUGCGaUCAGGGCGCCc -3'
miRNA:   3'- caGCgCCCUcgGGCGC-AGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 205747 0.69 0.54665
Target:  5'- uGUCGCGGG-G-CCGCGagccgugagcUCAccGAGUGCCg -3'
miRNA:   3'- -CAGCGCCCuCgGGCGC----------AGU--CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 139400 0.69 0.528233
Target:  5'- gGUCGCGacGGCCCGCGcgCAGcgagaguGCGCUg -3'
miRNA:   3'- -CAGCGCccUCGGGCGCa-GUCu------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 60187 0.69 0.565267
Target:  5'- cGUCGCGGuucccGAGCCCGUuaagauccCAGAGC-CCg -3'
miRNA:   3'- -CAGCGCC-----CUCGGGCGca------GUCUCGcGG- -5'
16200 5' -62.6 NC_004065.1 + 30980 0.69 0.54665
Target:  5'- --aGUGGGAuGCgcucgCCGCGUCGG-GCGCUg -3'
miRNA:   3'- cagCGCCCU-CG-----GGCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 90247 0.69 0.54665
Target:  5'- cGUCgGCGaaGGCCCGCGagagCAGAGUGaCCa -3'
miRNA:   3'- -CAG-CGCccUCGGGCGCa---GUCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 113414 0.69 0.574638
Target:  5'- cGUCGUggccaGGGAG-CUGCG-CAGAGCGgCg -3'
miRNA:   3'- -CAGCG-----CCCUCgGGCGCaGUCUCGCgG- -5'
16200 5' -62.6 NC_004065.1 + 109828 0.69 0.578397
Target:  5'- cGUCGCcguccugcugcggcgGGGGGCCauCGCG-CAG-GUGCCg -3'
miRNA:   3'- -CAGCG---------------CCCUCGG--GCGCaGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 230012 0.69 0.584045
Target:  5'- -cCcCGGGGGCCCGCGcgcacUCAGAcgGCCg -3'
miRNA:   3'- caGcGCCCUCGGGCGC-----AGUCUcgCGG- -5'
16200 5' -62.6 NC_004065.1 + 128401 0.69 0.528233
Target:  5'- -cUGUGGGGGCCgaGCGgcagCGGcggcGGCGCCg -3'
miRNA:   3'- caGCGCCCUCGGg-CGCa---GUC----UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 197124 0.69 0.584045
Target:  5'- aGUUGUGGGGgauGCCCaGCGgCAGAcgcucgccggcGCGCCu -3'
miRNA:   3'- -CAGCGCCCU---CGGG-CGCaGUCU-----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 110780 0.68 0.593481
Target:  5'- -gCGCGcG-GCCCGUuUCGGAGCGCa -3'
miRNA:   3'- caGCGCcCuCGGGCGcAGUCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 122720 0.68 0.637112
Target:  5'- uGUUGCGGaugguguagcacuGGCCgUGCGUCGG-GCGCCc -3'
miRNA:   3'- -CAGCGCCc------------UCGG-GCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 24972 0.68 0.640911
Target:  5'- gGUCGUGGGugggcgucccucGGCCUuuuGUGUguGGGCGUCc -3'
miRNA:   3'- -CAGCGCCC------------UCGGG---CGCAguCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 127320 0.68 0.640911
Target:  5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3'
miRNA:   3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 64875 0.68 0.640911
Target:  5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3'
miRNA:   3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.