Results 61 - 80 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 68165 | 0.67 | 0.669346 |
Target: 5'- aUCGCGGcGGcGCgCGCGaCGGAGCuGUCg -3' miRNA: 3'- cAGCGCC-CU-CGgGCGCaGUCUCG-CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 101822 | 0.67 | 0.66651 |
Target: 5'- gGUgGCGGGAcuggcacuaguaauGCUCGCG--GGGGCGUCg -3' miRNA: 3'- -CAgCGCCCU--------------CGGGCGCagUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 170605 | 0.67 | 0.659885 |
Target: 5'- uGUCGuCGGaGAcauugGCCgGCGUCAGGGaCGUg -3' miRNA: 3'- -CAGC-GCC-CU-----CGGgCGCAGUCUC-GCGg -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 88450 | 0.67 | 0.659885 |
Target: 5'- gGUgGCGGucGCCuCGCG-CAGAGagGCCa -3' miRNA: 3'- -CAgCGCCcuCGG-GCGCaGUCUCg-CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 225370 | 0.67 | 0.659885 |
Target: 5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3' miRNA: 3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 66625 | 0.67 | 0.650404 |
Target: 5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3' miRNA: 3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 125771 | 0.67 | 0.697547 |
Target: 5'- aUCGCGGGguGGCagaGaGUCuuGAGCGCCu -3' miRNA: 3'- cAGCGCCC--UCGgg-CgCAGu-CUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 137961 | 0.67 | 0.669346 |
Target: 5'- -gCGCGGcccuccGAGCgCGCGUgAGAugccucgagcGCGCCa -3' miRNA: 3'- caGCGCC------CUCGgGCGCAgUCU----------CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 71478 | 0.67 | 0.669346 |
Target: 5'- cUCGCGauGAGCgUGCGagAGAuGCGCCg -3' miRNA: 3'- cAGCGCc-CUCGgGCGCagUCU-CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 145309 | 0.66 | 0.743504 |
Target: 5'- cGUCGCcgcuucGGGuGCCgaGCGacacucgacaCAGGGCGCCu -3' miRNA: 3'- -CAGCG------CCCuCGGg-CGCa---------GUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 145778 | 0.66 | 0.740797 |
Target: 5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3' miRNA: 3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 189865 | 0.66 | 0.734451 |
Target: 5'- -cCGCGaGGGGUuuGCugccGUCGGcAGCGUCu -3' miRNA: 3'- caGCGC-CCUCGggCG----CAGUC-UCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 117407 | 0.66 | 0.734451 |
Target: 5'- -gCGCGcuGGGCUCGCGgcgCGGAGUggcaGCCg -3' miRNA: 3'- caGCGCc-CUCGGGCGCa--GUCUCG----CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 115805 | 0.66 | 0.725321 |
Target: 5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3' miRNA: 3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 99414 | 0.66 | 0.752474 |
Target: 5'- cUCGCagcaGGGGCCCgaGCGgCAGA-CGCCg -3' miRNA: 3'- cAGCGc---CCUCGGG--CGCaGUCUcGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 114576 | 0.66 | 0.725321 |
Target: 5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3' miRNA: 3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 200315 | 0.66 | 0.725321 |
Target: 5'- -aCGCaGGcagagguaccAGCCCGU--CGGGGCGCCg -3' miRNA: 3'- caGCGcCC----------UCGGGCGcaGUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 76389 | 0.66 | 0.725321 |
Target: 5'- -cCGCGGauGAGCUCGCcgccGUCcgAGuGGCGCCg -3' miRNA: 3'- caGCGCC--CUCGGGCG----CAG--UC-UCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 34239 | 0.66 | 0.725321 |
Target: 5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3' miRNA: 3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 139120 | 0.66 | 0.752474 |
Target: 5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3' miRNA: 3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home