miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 195497 1.09 0.001211
Target:  5'- uGUCGCGGGAGCCCGCGUCAGAGCGCCc -3'
miRNA:   3'- -CAGCGCCCUCGGGCGCAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 43428 0.73 0.325598
Target:  5'- gGUCcuCGGGAGUa-GCGUaCGGAGCGCCg -3'
miRNA:   3'- -CAGc-GCCCUCGggCGCA-GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163017 0.73 0.332513
Target:  5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3'
miRNA:   3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 87278 0.73 0.339534
Target:  5'- cGUCGCGGGAGagaCCGCuaCAGAagucgagcgagGCGCCc -3'
miRNA:   3'- -CAGCGCCCUCg--GGCGcaGUCU-----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 211234 0.72 0.374716
Target:  5'- cUUuCGGGAguaGCCCGCGUCugaguucucuguGAGCGCCu -3'
miRNA:   3'- cAGcGCCCU---CGGGCGCAGu-----------CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 222644 0.72 0.407463
Target:  5'- -cCGaGGaGGGCCCGCGUC--AGCGCCc -3'
miRNA:   3'- caGCgCC-CUCGGGCGCAGucUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 110849 0.72 0.407463
Target:  5'- -gCGCGGGccGCCCGCGUCGaaccGuCGCCa -3'
miRNA:   3'- caGCGCCCu-CGGGCGCAGUcu--C-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 74718 0.72 0.41552
Target:  5'- -gCGCGGGcGCCUGCGaCAGuAGCGUUc -3'
miRNA:   3'- caGCGCCCuCGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 146568 0.72 0.41552
Target:  5'- cGUCGCGGGuaaggugccGCUCGUGcCGGAGC-CCg -3'
miRNA:   3'- -CAGCGCCCu--------CGGGCGCaGUCUCGcGG- -5'
16200 5' -62.6 NC_004065.1 + 32856 0.71 0.423673
Target:  5'- -cCGCgGGGAGCUgGCGUCccuggucgagAGGcGCGCCg -3'
miRNA:   3'- caGCG-CCCUCGGgCGCAG----------UCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 151692 0.71 0.423673
Target:  5'- -gCGCGGGcGCCCugcaucgucuGCGUCGGGuCGCCc -3'
miRNA:   3'- caGCGCCCuCGGG----------CGCAGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 119184 0.71 0.431922
Target:  5'- -aCGCGGGcGGCCCGCGccccgCAcuGGUGCCu -3'
miRNA:   3'- caGCGCCC-UCGGGCGCa----GUc-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 54060 0.71 0.439426
Target:  5'- uUCGCGGGAGCggcaaucuucucaCCGuCGgCAGAGCcagaGCCa -3'
miRNA:   3'- cAGCGCCCUCG-------------GGC-GCaGUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 197786 0.71 0.448697
Target:  5'- aUCGCcGGuGUCCGCGUUGGucaccAGCGCCc -3'
miRNA:   3'- cAGCGcCCuCGGGCGCAGUC-----UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163284 0.71 0.465826
Target:  5'- gGUCGCGacgccgccGGGGUCCGaCGgCAcGGGCGCCa -3'
miRNA:   3'- -CAGCGC--------CCUCGGGC-GCaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 229494 0.71 0.465826
Target:  5'- cGUCGCGGaAGCUucacaCGCuggCGGGGCGCCu -3'
miRNA:   3'- -CAGCGCCcUCGG-----GCGca-GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 101421 0.71 0.465826
Target:  5'- -cCGUGGGGGCggcuggCGCGUgCGGAuGCGCCu -3'
miRNA:   3'- caGCGCCCUCGg-----GCGCA-GUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 106440 0.7 0.492136
Target:  5'- -gCGCGGGcGCUCGuCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- caGCGCCCuCGGGC-GCAGU-----CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 184150 0.7 0.501059
Target:  5'- uGUCGCGucuGGGGUCUuccucCGUCGGAGCgGCCa -3'
miRNA:   3'- -CAGCGC---CCUCGGGc----GCAGUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 25707 0.7 0.519111
Target:  5'- cGUCGUccGGGGGCCCGCGauaaCAGuAGaaacgGCCg -3'
miRNA:   3'- -CAGCG--CCCUCGGGCGCa---GUC-UCg----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.