Results 1 - 20 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 139120 | 0.66 | 0.752474 |
Target: 5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3' miRNA: 3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 122707 | 0.66 | 0.752474 |
Target: 5'- uGUCuGCGGGuGCUgaGCGUUcuGGCGUCg -3' miRNA: 3'- -CAG-CGCCCuCGGg-CGCAGucUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 35457 | 0.66 | 0.752474 |
Target: 5'- cGUCGUGcuggucGGAGCCCGCGgaaCGGuGUacgguuucuGCCu -3' miRNA: 3'- -CAGCGC------CCUCGGGCGCa--GUCuCG---------CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 99414 | 0.66 | 0.752474 |
Target: 5'- cUCGCagcaGGGGCCCgaGCGgCAGA-CGCCg -3' miRNA: 3'- cAGCGc---CCUCGGG--CGCaGUCUcGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 169256 | 0.66 | 0.743504 |
Target: 5'- --gGCGGGAGgCCGCGgccCuGuGCgGCCu -3' miRNA: 3'- cagCGCCCUCgGGCGCa--GuCuCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 153952 | 0.66 | 0.743504 |
Target: 5'- -cCGC-GGAGCCUGCGaCuugucuGCGCCg -3' miRNA: 3'- caGCGcCCUCGGGCGCaGucu---CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 145309 | 0.66 | 0.743504 |
Target: 5'- cGUCGCcgcuucGGGuGCCgaGCGacacucgacaCAGGGCGCCu -3' miRNA: 3'- -CAGCG------CCCuCGGg-CGCa---------GUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 145778 | 0.66 | 0.740797 |
Target: 5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3' miRNA: 3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 117407 | 0.66 | 0.734451 |
Target: 5'- -gCGCGcuGGGCUCGCGgcgCGGAGUggcaGCCg -3' miRNA: 3'- caGCGCc-CUCGGGCGCa--GUCUCG----CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 177483 | 0.66 | 0.734451 |
Target: 5'- --gGCGGGGGCgCaCGgCGGGGcCGCCg -3' miRNA: 3'- cagCGCCCUCGgGcGCaGUCUC-GCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 189865 | 0.66 | 0.734451 |
Target: 5'- -cCGCGaGGGGUuuGCugccGUCGGcAGCGUCu -3' miRNA: 3'- caGCGC-CCUCGggCG----CAGUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 169849 | 0.66 | 0.733542 |
Target: 5'- -cCGUGcGGGCCaGCGUCGaccugugcauggcGGGCGCCg -3' miRNA: 3'- caGCGCcCUCGGgCGCAGU-------------CUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 76389 | 0.66 | 0.725321 |
Target: 5'- -cCGCGGauGAGCUCGCcgccGUCcgAGuGGCGCCg -3' miRNA: 3'- caGCGCC--CUCGGGCG----CAG--UC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 3787 | 0.66 | 0.725321 |
Target: 5'- uUCGCGGGcAGCCUGgCGU----GUGCCg -3' miRNA: 3'- cAGCGCCC-UCGGGC-GCAgucuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 115805 | 0.66 | 0.725321 |
Target: 5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3' miRNA: 3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 114576 | 0.66 | 0.725321 |
Target: 5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3' miRNA: 3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 139902 | 0.66 | 0.725321 |
Target: 5'- -cCGCGGG-GCCUcCGgcCGGcGGCGCCa -3' miRNA: 3'- caGCGCCCuCGGGcGCa-GUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 200315 | 0.66 | 0.725321 |
Target: 5'- -aCGCaGGcagagguaccAGCCCGU--CGGGGCGCCg -3' miRNA: 3'- caGCGcCC----------UCGGGCGcaGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 34239 | 0.66 | 0.725321 |
Target: 5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3' miRNA: 3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 38422 | 0.66 | 0.724404 |
Target: 5'- uUCGCGGGAGaggGCGUCuacGAcgacgguuuucgcGCGCCg -3' miRNA: 3'- cAGCGCCCUCgggCGCAGu--CU-------------CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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