miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 38422 0.66 0.724404
Target:  5'- uUCGCGGGAGaggGCGUCuacGAcgacgguuuucgcGCGCCg -3'
miRNA:   3'- cAGCGCCCUCgggCGCAGu--CU-------------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34536 0.66 0.716123
Target:  5'- -aCGCGGGcuCCCGCGacagCgAGAGCGaCUc -3'
miRNA:   3'- caGCGCCCucGGGCGCa---G-UCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 68583 0.66 0.716123
Target:  5'- -aCGCGGcGG-CgGCGaucCAGAGCGCCg -3'
miRNA:   3'- caGCGCCcUCgGgCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 149703 0.66 0.716123
Target:  5'- -aCGcCGGGGGgCCGCGgcc--GCGCCg -3'
miRNA:   3'- caGC-GCCCUCgGGCGCagucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 96278 0.66 0.716123
Target:  5'- --gGCGGGgcGGCCagggGCGUCAcGGaCGCCg -3'
miRNA:   3'- cagCGCCC--UCGGg---CGCAGUcUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 100091 0.66 0.715199
Target:  5'- --gGUGGGAGUCCGgGUCuaccucgggaaacAG-GUGCCg -3'
miRNA:   3'- cagCGCCCUCGGGCgCAG-------------UCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34615 0.66 0.706862
Target:  5'- --gGCGGGAGCguaCGUGUaCGGcuCGCCg -3'
miRNA:   3'- cagCGCCCUCGg--GCGCA-GUCucGCGG- -5'
16200 5' -62.6 NC_004065.1 + 28554 0.66 0.706862
Target:  5'- gGUCGacCGGGAuCUCGCGg-GGAGCGUCc -3'
miRNA:   3'- -CAGC--GCCCUcGGGCGCagUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 126255 0.67 0.697547
Target:  5'- --gGCGGaucGAGCCgcccagCGCGuUCAGcAGCGCCu -3'
miRNA:   3'- cagCGCC---CUCGG------GCGC-AGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 35943 0.67 0.697547
Target:  5'- uGUCGCGGccGCagGuCGUCGGAcucGCGCCg -3'
miRNA:   3'- -CAGCGCCcuCGggC-GCAGUCU---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 125771 0.67 0.697547
Target:  5'- aUCGCGGGguGGCagaGaGUCuuGAGCGCCu -3'
miRNA:   3'- cAGCGCCC--UCGgg-CgCAGu-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 74822 0.67 0.688184
Target:  5'- -gCGUGGaGAcGCCCGgGUCgggaccgaGGGGCGCa -3'
miRNA:   3'- caGCGCC-CU-CGGGCgCAG--------UCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 68424 0.67 0.669346
Target:  5'- -cCG-GGGAGCgCGCGUUcGuGUGCCu -3'
miRNA:   3'- caGCgCCCUCGgGCGCAGuCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 68165 0.67 0.669346
Target:  5'- aUCGCGGcGGcGCgCGCGaCGGAGCuGUCg -3'
miRNA:   3'- cAGCGCC-CU-CGgGCGCaGUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 136856 0.67 0.669346
Target:  5'- uGUCGCGGGAcggauGCCgcggucaGCGUCAGAa-GCUg -3'
miRNA:   3'- -CAGCGCCCU-----CGGg------CGCAGUCUcgCGG- -5'
16200 5' -62.6 NC_004065.1 + 71478 0.67 0.669346
Target:  5'- cUCGCGauGAGCgUGCGagAGAuGCGCCg -3'
miRNA:   3'- cAGCGCc-CUCGgGCGCagUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 137961 0.67 0.669346
Target:  5'- -gCGCGGcccuccGAGCgCGCGUgAGAugccucgagcGCGCCa -3'
miRNA:   3'- caGCGCC------CUCGgGCGCAgUCU----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 101822 0.67 0.66651
Target:  5'- gGUgGCGGGAcuggcacuaguaauGCUCGCG--GGGGCGUCg -3'
miRNA:   3'- -CAgCGCCCU--------------CGGGCGCagUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 170605 0.67 0.659885
Target:  5'- uGUCGuCGGaGAcauugGCCgGCGUCAGGGaCGUg -3'
miRNA:   3'- -CAGC-GCC-CU-----CGGgCGCAGUCUC-GCGg -5'
16200 5' -62.6 NC_004065.1 + 225370 0.67 0.659885
Target:  5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3'
miRNA:   3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.