miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 225370 0.67 0.659885
Target:  5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3'
miRNA:   3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 162254 0.67 0.654198
Target:  5'- aGUC-UGGGcGCCCGCGccguucgucacgccgUCGGAcgcgGCGCCg -3'
miRNA:   3'- -CAGcGCCCuCGGGCGC---------------AGUCU----CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 53264 0.67 0.650404
Target:  5'- -gCGCGaGGAGucuCCCGCGUCAcuGAuuCGCCa -3'
miRNA:   3'- caGCGC-CCUC---GGGCGCAGU--CUc-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 66625 0.67 0.650404
Target:  5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3'
miRNA:   3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 184907 0.67 0.650404
Target:  5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3'
miRNA:   3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 104315 0.67 0.649455
Target:  5'- --gGCGGGcccGCCCcagggggaugaucGgGUCAGGGCGCUc -3'
miRNA:   3'- cagCGCCCu--CGGG-------------CgCAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 33615 0.67 0.649455
Target:  5'- -cUGCGGGccggcauggccaaGGCCauCGCGuUCGGGGCGCg -3'
miRNA:   3'- caGCGCCC-------------UCGG--GCGC-AGUCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 24972 0.68 0.640911
Target:  5'- gGUCGUGGGugggcgucccucGGCCUuuuGUGUguGGGCGUCc -3'
miRNA:   3'- -CAGCGCCC------------UCGGG---CGCAguCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 127320 0.68 0.640911
Target:  5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3'
miRNA:   3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 64875 0.68 0.640911
Target:  5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3'
miRNA:   3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 78318 0.68 0.640911
Target:  5'- -gCGUGGGcGaCCCGaCGcagacgaugCAGGGCGCCg -3'
miRNA:   3'- caGCGCCCuC-GGGC-GCa--------GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 122720 0.68 0.637112
Target:  5'- uGUUGCGGaugguguagcacuGGCCgUGCGUCGG-GCGCCc -3'
miRNA:   3'- -CAGCGCCc------------UCGG-GCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163464 0.68 0.621913
Target:  5'- uUCGaUGGGuAGCUCGagcucCGUCGGcGGCGCCg -3'
miRNA:   3'- cAGC-GCCC-UCGGGC-----GCAGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 159753 0.68 0.619064
Target:  5'- -cCGCGGGGuugcGCCaguucuuucgcaugUGCGUCAGGGCGgUCa -3'
miRNA:   3'- caGCGCCCU----CGG--------------GCGCAGUCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 163360 0.68 0.61337
Target:  5'- -cUGUgGGGGGCCCgguggcucuccaucaGCGUCAGcgcguccgccacgcAGCGCCg -3'
miRNA:   3'- caGCG-CCCUCGGG---------------CGCAGUC--------------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 119513 0.68 0.612421
Target:  5'- -gCGCGGcGAGCCUGUcgacauccuuGUcCGGGGCgGCCg -3'
miRNA:   3'- caGCGCC-CUCGGGCG----------CA-GUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 4388 0.68 0.602942
Target:  5'- --gGCGGGAGCCggaGUGcuguUCGGAGCggugGCCa -3'
miRNA:   3'- cagCGCCCUCGGg--CGC----AGUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 90633 0.68 0.593481
Target:  5'- -gCGCGGGccgucGCgaccccaucagaCCGCGUCgucggugguggAGAGCGCCg -3'
miRNA:   3'- caGCGCCCu----CG------------GGCGCAG-----------UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 135674 0.68 0.593481
Target:  5'- cGUCG-GGGGGCUCGCG-CAGAG-GUUc -3'
miRNA:   3'- -CAGCgCCCUCGGGCGCaGUCUCgCGG- -5'
16200 5' -62.6 NC_004065.1 + 110780 0.68 0.593481
Target:  5'- -gCGCGcG-GCCCGUuUCGGAGCGCa -3'
miRNA:   3'- caGCGCcCuCGGGCGcAGUCUCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.