miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 3787 0.66 0.725321
Target:  5'- uUCGCGGGcAGCCUGgCGU----GUGCCg -3'
miRNA:   3'- cAGCGCCC-UCGGGC-GCAgucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 4388 0.68 0.602942
Target:  5'- --gGCGGGAGCCggaGUGcuguUCGGAGCggugGCCa -3'
miRNA:   3'- cagCGCCCUCGGg--CGC----AGUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 24972 0.68 0.640911
Target:  5'- gGUCGUGGGugggcgucccucGGCCUuuuGUGUguGGGCGUCc -3'
miRNA:   3'- -CAGCGCCC------------UCGGG---CGCAguCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 25707 0.7 0.519111
Target:  5'- cGUCGUccGGGGGCCCGCGauaaCAGuAGaaacgGCCg -3'
miRNA:   3'- -CAGCG--CCCUCGGGCGCa---GUC-UCg----CGG- -5'
16200 5' -62.6 NC_004065.1 + 28554 0.66 0.706862
Target:  5'- gGUCGacCGGGAuCUCGCGg-GGAGCGUCc -3'
miRNA:   3'- -CAGC--GCCCUcGGGCGCagUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 30980 0.69 0.54665
Target:  5'- --aGUGGGAuGCgcucgCCGCGUCGG-GCGCUg -3'
miRNA:   3'- cagCGCCCU-CG-----GGCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 32856 0.71 0.423673
Target:  5'- -cCGCgGGGAGCUgGCGUCccuggucgagAGGcGCGCCg -3'
miRNA:   3'- caGCG-CCCUCGGgCGCAG----------UCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 33615 0.67 0.649455
Target:  5'- -cUGCGGGccggcauggccaaGGCCauCGCGuUCGGGGCGCg -3'
miRNA:   3'- caGCGCCC-------------UCGG--GCGC-AGUCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 34239 0.66 0.725321
Target:  5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3'
miRNA:   3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34536 0.66 0.716123
Target:  5'- -aCGCGGGcuCCCGCGacagCgAGAGCGaCUc -3'
miRNA:   3'- caGCGCCCucGGGCGCa---G-UCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 34615 0.66 0.706862
Target:  5'- --gGCGGGAGCguaCGUGUaCGGcuCGCCg -3'
miRNA:   3'- cagCGCCCUCGg--GCGCA-GUCucGCGG- -5'
16200 5' -62.6 NC_004065.1 + 35457 0.66 0.752474
Target:  5'- cGUCGUGcuggucGGAGCCCGCGgaaCGGuGUacgguuucuGCCu -3'
miRNA:   3'- -CAGCGC------CCUCGGGCGCa--GUCuCG---------CGG- -5'
16200 5' -62.6 NC_004065.1 + 35943 0.67 0.697547
Target:  5'- uGUCGCGGccGCagGuCGUCGGAcucGCGCCg -3'
miRNA:   3'- -CAGCGCCcuCGggC-GCAGUCU---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 38422 0.66 0.724404
Target:  5'- uUCGCGGGAGaggGCGUCuacGAcgacgguuuucgcGCGCCg -3'
miRNA:   3'- cAGCGCCCUCgggCGCAGu--CU-------------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 43428 0.73 0.325598
Target:  5'- gGUCcuCGGGAGUa-GCGUaCGGAGCGCCg -3'
miRNA:   3'- -CAGc-GCCCUCGggCGCA-GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 46290 0.68 0.593481
Target:  5'- -cCGUGGGcgaccuGGaCCUGUcUCAGGGCGCCu -3'
miRNA:   3'- caGCGCCC------UC-GGGCGcAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 53264 0.67 0.650404
Target:  5'- -gCGCGaGGAGucuCCCGCGUCAcuGAuuCGCCa -3'
miRNA:   3'- caGCGC-CCUC---GGGCGCAGU--CUc-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 54060 0.71 0.439426
Target:  5'- uUCGCGGGAGCggcaaucuucucaCCGuCGgCAGAGCcagaGCCa -3'
miRNA:   3'- cAGCGCCCUCG-------------GGC-GCaGUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 56560 0.68 0.593481
Target:  5'- -cCGCuucGGuGCUgGCGUC-GAGCGCCg -3'
miRNA:   3'- caGCGc--CCuCGGgCGCAGuCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 60187 0.69 0.565267
Target:  5'- cGUCGCGGuucccGAGCCCGUuaagauccCAGAGC-CCg -3'
miRNA:   3'- -CAGCGCC-----CUCGGGCGca------GUCUCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.