miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 104315 0.67 0.649455
Target:  5'- --gGCGGGcccGCCCcagggggaugaucGgGUCAGGGCGCUc -3'
miRNA:   3'- cagCGCCCu--CGGG-------------CgCAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 106440 0.7 0.492136
Target:  5'- -gCGCGGGcGCUCGuCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- caGCGCCCuCGGGC-GCAGU-----CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 109828 0.69 0.578397
Target:  5'- cGUCGCcguccugcugcggcgGGGGGCCauCGCG-CAG-GUGCCg -3'
miRNA:   3'- -CAGCG---------------CCCUCGG--GCGCaGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 110780 0.68 0.593481
Target:  5'- -gCGCGcG-GCCCGUuUCGGAGCGCa -3'
miRNA:   3'- caGCGCcCuCGGGCGcAGUCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 110849 0.72 0.407463
Target:  5'- -gCGCGGGccGCCCGCGUCGaaccGuCGCCa -3'
miRNA:   3'- caGCGCCCu-CGGGCGCAGUcu--C-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 113414 0.69 0.574638
Target:  5'- cGUCGUggccaGGGAG-CUGCG-CAGAGCGgCg -3'
miRNA:   3'- -CAGCG-----CCCUCgGGCGCaGUCUCGCgG- -5'
16200 5' -62.6 NC_004065.1 + 114576 0.66 0.725321
Target:  5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3'
miRNA:   3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 115805 0.66 0.725321
Target:  5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3'
miRNA:   3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 117407 0.66 0.734451
Target:  5'- -gCGCGcuGGGCUCGCGgcgCGGAGUggcaGCCg -3'
miRNA:   3'- caGCGCc-CUCGGGCGCa--GUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 119184 0.71 0.431922
Target:  5'- -aCGCGGGcGGCCCGCGccccgCAcuGGUGCCu -3'
miRNA:   3'- caGCGCCC-UCGGGCGCa----GUc-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 119513 0.68 0.612421
Target:  5'- -gCGCGGcGAGCCUGUcgacauccuuGUcCGGGGCgGCCg -3'
miRNA:   3'- caGCGCC-CUCGGGCG----------CA-GUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 122707 0.66 0.752474
Target:  5'- uGUCuGCGGGuGCUgaGCGUUcuGGCGUCg -3'
miRNA:   3'- -CAG-CGCCCuCGGg-CGCAGucUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 122720 0.68 0.637112
Target:  5'- uGUUGCGGaugguguagcacuGGCCgUGCGUCGG-GCGCCc -3'
miRNA:   3'- -CAGCGCCc------------UCGG-GCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 123672 0.69 0.537415
Target:  5'- -aCGUGGcGcgcuGCCCGUG-CAGcAGCGCCg -3'
miRNA:   3'- caGCGCC-Cu---CGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 125771 0.67 0.697547
Target:  5'- aUCGCGGGguGGCagaGaGUCuuGAGCGCCu -3'
miRNA:   3'- cAGCGCCC--UCGgg-CgCAGu-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 126255 0.67 0.697547
Target:  5'- --gGCGGaucGAGCCgcccagCGCGuUCAGcAGCGCCu -3'
miRNA:   3'- cagCGCC---CUCGG------GCGC-AGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 127320 0.68 0.640911
Target:  5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3'
miRNA:   3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 128401 0.69 0.528233
Target:  5'- -cUGUGGGGGCCgaGCGgcagCGGcggcGGCGCCg -3'
miRNA:   3'- caGCGCCCUCGGg-CGCa---GUC----UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 135674 0.68 0.593481
Target:  5'- cGUCG-GGGGGCUCGCG-CAGAG-GUUc -3'
miRNA:   3'- -CAGCgCCCUCGGGCGCaGUCUCgCGG- -5'
16200 5' -62.6 NC_004065.1 + 136856 0.67 0.669346
Target:  5'- uGUCGCGGGAcggauGCCgcggucaGCGUCAGAa-GCUg -3'
miRNA:   3'- -CAGCGCCCU-----CGGg------CGCAGUCUcgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.