miRNA display CGI


Results 61 - 80 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 137961 0.67 0.669346
Target:  5'- -gCGCGGcccuccGAGCgCGCGUgAGAugccucgagcGCGCCa -3'
miRNA:   3'- caGCGCC------CUCGgGCGCAgUCU----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 138316 0.69 0.528233
Target:  5'- -aCGCGGGAGCUCGCGgaCAucGUgGCCg -3'
miRNA:   3'- caGCGCCCUCGGGCGCa-GUcuCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 139120 0.66 0.752474
Target:  5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3'
miRNA:   3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 139400 0.69 0.528233
Target:  5'- gGUCGCGacGGCCCGCGcgCAGcgagaguGCGCUg -3'
miRNA:   3'- -CAGCGCccUCGGGCGCa-GUCu------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 139902 0.66 0.725321
Target:  5'- -cCGCGGG-GCCUcCGgcCGGcGGCGCCa -3'
miRNA:   3'- caGCGCCCuCGGGcGCa-GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 142741 0.69 0.574638
Target:  5'- -aUGgGGGAuaUUGCGaUCAGGGCGCCc -3'
miRNA:   3'- caGCgCCCUcgGGCGC-AGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145309 0.66 0.743504
Target:  5'- cGUCGCcgcuucGGGuGCCgaGCGacacucgacaCAGGGCGCCu -3'
miRNA:   3'- -CAGCG------CCCuCGGg-CGCa---------GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145778 0.66 0.740797
Target:  5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3'
miRNA:   3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5'
16200 5' -62.6 NC_004065.1 + 146568 0.72 0.41552
Target:  5'- cGUCGCGGGuaaggugccGCUCGUGcCGGAGC-CCg -3'
miRNA:   3'- -CAGCGCCCu--------CGGGCGCaGUCUCGcGG- -5'
16200 5' -62.6 NC_004065.1 + 149703 0.66 0.716123
Target:  5'- -aCGcCGGGGGgCCGCGgcc--GCGCCg -3'
miRNA:   3'- caGC-GCCCUCgGGCGCagucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 151692 0.71 0.423673
Target:  5'- -gCGCGGGcGCCCugcaucgucuGCGUCGGGuCGCCc -3'
miRNA:   3'- caGCGCCCuCGGG----------CGCAGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 153952 0.66 0.743504
Target:  5'- -cCGC-GGAGCCUGCGaCuugucuGCGCCg -3'
miRNA:   3'- caGCGcCCUCGGGCGCaGucu---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 156289 0.69 0.555936
Target:  5'- --gGCGGGAGUagCgGCGgcagCAGuGGCGCCa -3'
miRNA:   3'- cagCGCCCUCG--GgCGCa---GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 159753 0.68 0.619064
Target:  5'- -cCGCGGGGuugcGCCaguucuuucgcaugUGCGUCAGGGCGgUCa -3'
miRNA:   3'- caGCGCCCU----CGG--------------GCGCAGUCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 162254 0.67 0.654198
Target:  5'- aGUC-UGGGcGCCCGCGccguucgucacgccgUCGGAcgcgGCGCCg -3'
miRNA:   3'- -CAGcGCCCuCGGGCGC---------------AGUCU----CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163017 0.73 0.332513
Target:  5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3'
miRNA:   3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163284 0.71 0.465826
Target:  5'- gGUCGCGacgccgccGGGGUCCGaCGgCAcGGGCGCCa -3'
miRNA:   3'- -CAGCGC--------CCUCGGGC-GCaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163360 0.68 0.61337
Target:  5'- -cUGUgGGGGGCCCgguggcucuccaucaGCGUCAGcgcguccgccacgcAGCGCCg -3'
miRNA:   3'- caGCG-CCCUCGGG---------------CGCAGUC--------------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163464 0.68 0.621913
Target:  5'- uUCGaUGGGuAGCUCGagcucCGUCGGcGGCGCCg -3'
miRNA:   3'- cAGC-GCCC-UCGGGC-----GCAGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 169256 0.66 0.743504
Target:  5'- --gGCGGGAGgCCGCGgccCuGuGCgGCCu -3'
miRNA:   3'- cagCGCCCUCgGGCGCa--GuCuCG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.