miRNA display CGI


Results 81 - 97 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 169849 0.66 0.733542
Target:  5'- -cCGUGcGGGCCaGCGUCGaccugugcauggcGGGCGCCg -3'
miRNA:   3'- caGCGCcCUCGGgCGCAGU-------------CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 170605 0.67 0.659885
Target:  5'- uGUCGuCGGaGAcauugGCCgGCGUCAGGGaCGUg -3'
miRNA:   3'- -CAGC-GCC-CU-----CGGgCGCAGUCUC-GCGg -5'
16200 5' -62.6 NC_004065.1 + 177483 0.66 0.734451
Target:  5'- --gGCGGGGGCgCaCGgCGGGGcCGCCg -3'
miRNA:   3'- cagCGCCCUCGgGcGCaGUCUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 184150 0.7 0.501059
Target:  5'- uGUCGCGucuGGGGUCUuccucCGUCGGAGCgGCCa -3'
miRNA:   3'- -CAGCGC---CCUCGGGc----GCAGUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 184907 0.67 0.650404
Target:  5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3'
miRNA:   3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 189865 0.66 0.734451
Target:  5'- -cCGCGaGGGGUuuGCugccGUCGGcAGCGUCu -3'
miRNA:   3'- caGCGC-CCUCGggCG----CAGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 195497 1.09 0.001211
Target:  5'- uGUCGCGGGAGCCCGCGUCAGAGCGCCc -3'
miRNA:   3'- -CAGCGCCCUCGGGCGCAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 197124 0.69 0.584045
Target:  5'- aGUUGUGGGGgauGCCCaGCGgCAGAcgcucgccggcGCGCCu -3'
miRNA:   3'- -CAGCGCCCU---CGGG-CGCaGUCU-----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 197786 0.71 0.448697
Target:  5'- aUCGCcGGuGUCCGCGUUGGucaccAGCGCCc -3'
miRNA:   3'- cAGCGcCCuCGGGCGCAGUC-----UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 200315 0.66 0.725321
Target:  5'- -aCGCaGGcagagguaccAGCCCGU--CGGGGCGCCg -3'
miRNA:   3'- caGCGcCC----------UCGGGCGcaGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 205747 0.69 0.54665
Target:  5'- uGUCGCGGG-G-CCGCGagccgugagcUCAccGAGUGCCg -3'
miRNA:   3'- -CAGCGCCCuCgGGCGC----------AGU--CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 211234 0.72 0.374716
Target:  5'- cUUuCGGGAguaGCCCGCGUCugaguucucuguGAGCGCCu -3'
miRNA:   3'- cAGcGCCCU---CGGGCGCAGu-----------CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 211904 0.69 0.555936
Target:  5'- -cCGCGGcGGGCCCggagguucuuccGCGaCAGAGaUGCCg -3'
miRNA:   3'- caGCGCC-CUCGGG------------CGCaGUCUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 222644 0.72 0.407463
Target:  5'- -cCGaGGaGGGCCCGCGUC--AGCGCCc -3'
miRNA:   3'- caGCgCC-CUCGGGCGCAGucUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 225370 0.67 0.659885
Target:  5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3'
miRNA:   3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 229494 0.71 0.465826
Target:  5'- cGUCGCGGaAGCUucacaCGCuggCGGGGCGCCu -3'
miRNA:   3'- -CAGCGCCcUCGG-----GCGca-GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 230012 0.69 0.584045
Target:  5'- -cCcCGGGGGCCCGCGcgcacUCAGAcgGCCg -3'
miRNA:   3'- caGcGCCCUCGGGCGC-----AGUCUcgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.