Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 163284 | 0.71 | 0.465826 |
Target: 5'- gGUCGCGacgccgccGGGGUCCGaCGgCAcGGGCGCCa -3' miRNA: 3'- -CAGCGC--------CCUCGGGC-GCaGU-CUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 163017 | 0.73 | 0.332513 |
Target: 5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3' miRNA: 3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 162254 | 0.67 | 0.654198 |
Target: 5'- aGUC-UGGGcGCCCGCGccguucgucacgccgUCGGAcgcgGCGCCg -3' miRNA: 3'- -CAGcGCCCuCGGGCGC---------------AGUCU----CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 159753 | 0.68 | 0.619064 |
Target: 5'- -cCGCGGGGuugcGCCaguucuuucgcaugUGCGUCAGGGCGgUCa -3' miRNA: 3'- caGCGCCCU----CGG--------------GCGCAGUCUCGC-GG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 156289 | 0.69 | 0.555936 |
Target: 5'- --gGCGGGAGUagCgGCGgcagCAGuGGCGCCa -3' miRNA: 3'- cagCGCCCUCG--GgCGCa---GUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 153952 | 0.66 | 0.743504 |
Target: 5'- -cCGC-GGAGCCUGCGaCuugucuGCGCCg -3' miRNA: 3'- caGCGcCCUCGGGCGCaGucu---CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 151692 | 0.71 | 0.423673 |
Target: 5'- -gCGCGGGcGCCCugcaucgucuGCGUCGGGuCGCCc -3' miRNA: 3'- caGCGCCCuCGGG----------CGCAGUCUcGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 149703 | 0.66 | 0.716123 |
Target: 5'- -aCGcCGGGGGgCCGCGgcc--GCGCCg -3' miRNA: 3'- caGC-GCCCUCgGGCGCagucuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 146568 | 0.72 | 0.41552 |
Target: 5'- cGUCGCGGGuaaggugccGCUCGUGcCGGAGC-CCg -3' miRNA: 3'- -CAGCGCCCu--------CGGGCGCaGUCUCGcGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 145778 | 0.66 | 0.740797 |
Target: 5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3' miRNA: 3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 145309 | 0.66 | 0.743504 |
Target: 5'- cGUCGCcgcuucGGGuGCCgaGCGacacucgacaCAGGGCGCCu -3' miRNA: 3'- -CAGCG------CCCuCGGg-CGCa---------GUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 142741 | 0.69 | 0.574638 |
Target: 5'- -aUGgGGGAuaUUGCGaUCAGGGCGCCc -3' miRNA: 3'- caGCgCCCUcgGGCGC-AGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 139902 | 0.66 | 0.725321 |
Target: 5'- -cCGCGGG-GCCUcCGgcCGGcGGCGCCa -3' miRNA: 3'- caGCGCCCuCGGGcGCa-GUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 139400 | 0.69 | 0.528233 |
Target: 5'- gGUCGCGacGGCCCGCGcgCAGcgagaguGCGCUg -3' miRNA: 3'- -CAGCGCccUCGGGCGCa-GUCu------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 139120 | 0.66 | 0.752474 |
Target: 5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3' miRNA: 3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 138316 | 0.69 | 0.528233 |
Target: 5'- -aCGCGGGAGCUCGCGgaCAucGUgGCCg -3' miRNA: 3'- caGCGCCCUCGGGCGCa-GUcuCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 137961 | 0.67 | 0.669346 |
Target: 5'- -gCGCGGcccuccGAGCgCGCGUgAGAugccucgagcGCGCCa -3' miRNA: 3'- caGCGCC------CUCGgGCGCAgUCU----------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 136856 | 0.67 | 0.669346 |
Target: 5'- uGUCGCGGGAcggauGCCgcggucaGCGUCAGAa-GCUg -3' miRNA: 3'- -CAGCGCCCU-----CGGg------CGCAGUCUcgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 135674 | 0.68 | 0.593481 |
Target: 5'- cGUCG-GGGGGCUCGCG-CAGAG-GUUc -3' miRNA: 3'- -CAGCgCCCUCGGGCGCaGUCUCgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 128401 | 0.69 | 0.528233 |
Target: 5'- -cUGUGGGGGCCgaGCGgcagCGGcggcGGCGCCg -3' miRNA: 3'- caGCGCCCUCGGg-CGCa---GUC----UCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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