miRNA display CGI


Results 61 - 80 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 99414 0.66 0.752474
Target:  5'- cUCGCagcaGGGGCCCgaGCGgCAGA-CGCCg -3'
miRNA:   3'- cAGCGc---CCUCGGG--CGCaGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 96278 0.66 0.716123
Target:  5'- --gGCGGGgcGGCCagggGCGUCAcGGaCGCCg -3'
miRNA:   3'- cagCGCCC--UCGGg---CGCAGUcUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 96126 0.66 0.724404
Target:  5'- gGUCGCuccgcgaGGGuGGCCCGuCGUuccgccCGGcGCGCCg -3'
miRNA:   3'- -CAGCG-------CCC-UCGGGC-GCA------GUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 90633 0.68 0.593481
Target:  5'- -gCGCGGGccgucGCgaccccaucagaCCGCGUCgucggugguggAGAGCGCCg -3'
miRNA:   3'- caGCGCCCu----CG------------GGCGCAG-----------UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 90247 0.69 0.54665
Target:  5'- cGUCgGCGaaGGCCCGCGagagCAGAGUGaCCa -3'
miRNA:   3'- -CAG-CGCccUCGGGCGCa---GUCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 88450 0.67 0.659885
Target:  5'- gGUgGCGGucGCCuCGCG-CAGAGagGCCa -3'
miRNA:   3'- -CAgCGCCcuCGG-GCGCaGUCUCg-CGG- -5'
16200 5' -62.6 NC_004065.1 + 87278 0.73 0.339534
Target:  5'- cGUCGCGGGAGagaCCGCuaCAGAagucgagcgagGCGCCc -3'
miRNA:   3'- -CAGCGCCCUCg--GGCGcaGUCU-----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 78318 0.68 0.640911
Target:  5'- -gCGUGGGcGaCCCGaCGcagacgaugCAGGGCGCCg -3'
miRNA:   3'- caGCGCCCuC-GGGC-GCa--------GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 76389 0.66 0.725321
Target:  5'- -cCGCGGauGAGCUCGCcgccGUCcgAGuGGCGCCg -3'
miRNA:   3'- caGCGCC--CUCGGGCG----CAG--UC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 74822 0.67 0.688184
Target:  5'- -gCGUGGaGAcGCCCGgGUCgggaccgaGGGGCGCa -3'
miRNA:   3'- caGCGCC-CU-CGGGCgCAG--------UCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 74718 0.72 0.41552
Target:  5'- -gCGCGGGcGCCUGCGaCAGuAGCGUUc -3'
miRNA:   3'- caGCGCCCuCGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 71478 0.67 0.669346
Target:  5'- cUCGCGauGAGCgUGCGagAGAuGCGCCg -3'
miRNA:   3'- cAGCGCc-CUCGgGCGCagUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 68583 0.66 0.716123
Target:  5'- -aCGCGGcGG-CgGCGaucCAGAGCGCCg -3'
miRNA:   3'- caGCGCCcUCgGgCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 68424 0.67 0.669346
Target:  5'- -cCG-GGGAGCgCGCGUUcGuGUGCCu -3'
miRNA:   3'- caGCgCCCUCGgGCGCAGuCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 68165 0.67 0.669346
Target:  5'- aUCGCGGcGGcGCgCGCGaCGGAGCuGUCg -3'
miRNA:   3'- cAGCGCC-CU-CGgGCGCaGUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 66625 0.67 0.650404
Target:  5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3'
miRNA:   3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 64875 0.68 0.640911
Target:  5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3'
miRNA:   3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 60187 0.69 0.565267
Target:  5'- cGUCGCGGuucccGAGCCCGUuaagauccCAGAGC-CCg -3'
miRNA:   3'- -CAGCGCC-----CUCGGGCGca------GUCUCGcGG- -5'
16200 5' -62.6 NC_004065.1 + 56560 0.68 0.593481
Target:  5'- -cCGCuucGGuGCUgGCGUC-GAGCGCCg -3'
miRNA:   3'- caGCGc--CCuCGGgCGCAGuCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 54060 0.71 0.439426
Target:  5'- uUCGCGGGAGCggcaaucuucucaCCGuCGgCAGAGCcagaGCCa -3'
miRNA:   3'- cAGCGCCCUCG-------------GGC-GCaGUCUCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.