miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 46290 0.68 0.593481
Target:  5'- -cCGUGGGcgaccuGGaCCUGUcUCAGGGCGCCu -3'
miRNA:   3'- caGCGCCC------UC-GGGCGcAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 128401 0.69 0.528233
Target:  5'- -cUGUGGGGGCCgaGCGgcagCGGcggcGGCGCCg -3'
miRNA:   3'- caGCGCCCUCGGg-CGCa---GUC----UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 123672 0.69 0.537415
Target:  5'- -aCGUGGcGcgcuGCCCGUG-CAGcAGCGCCg -3'
miRNA:   3'- caGCGCC-Cu---CGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 30980 0.69 0.54665
Target:  5'- --aGUGGGAuGCgcucgCCGCGUCGG-GCGCUg -3'
miRNA:   3'- cagCGCCCU-CG-----GGCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 90247 0.69 0.54665
Target:  5'- cGUCgGCGaaGGCCCGCGagagCAGAGUGaCCa -3'
miRNA:   3'- -CAG-CGCccUCGGGCGCa---GUCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 113414 0.69 0.574638
Target:  5'- cGUCGUggccaGGGAG-CUGCG-CAGAGCGgCg -3'
miRNA:   3'- -CAGCG-----CCCUCgGGCGCaGUCUCGCgG- -5'
16200 5' -62.6 NC_004065.1 + 109828 0.69 0.578397
Target:  5'- cGUCGCcguccugcugcggcgGGGGGCCauCGCG-CAG-GUGCCg -3'
miRNA:   3'- -CAGCG---------------CCCUCGG--GCGCaGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 197124 0.69 0.584045
Target:  5'- aGUUGUGGGGgauGCCCaGCGgCAGAcgcucgccggcGCGCCu -3'
miRNA:   3'- -CAGCGCCCU---CGGG-CGCaGUCU-----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 110780 0.68 0.593481
Target:  5'- -gCGCGcG-GCCCGUuUCGGAGCGCa -3'
miRNA:   3'- caGCGCcCuCGGGCGcAGUCUCGCGg -5'
16200 5' -62.6 NC_004065.1 + 139400 0.69 0.528233
Target:  5'- gGUCGCGacGGCCCGCGcgCAGcgagaguGCGCUg -3'
miRNA:   3'- -CAGCGCccUCGGGCGCa-GUCu------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 25707 0.7 0.519111
Target:  5'- cGUCGUccGGGGGCCCGCGauaaCAGuAGaaacgGCCg -3'
miRNA:   3'- -CAGCG--CCCUCGGGCGCa---GUC-UCg----CGG- -5'
16200 5' -62.6 NC_004065.1 + 163284 0.71 0.465826
Target:  5'- gGUCGCGacgccgccGGGGUCCGaCGgCAcGGGCGCCa -3'
miRNA:   3'- -CAGCGC--------CCUCGGGC-GCaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 211234 0.72 0.374716
Target:  5'- cUUuCGGGAguaGCCCGCGUCugaguucucuguGAGCGCCu -3'
miRNA:   3'- cAGcGCCCU---CGGGCGCAGu-----------CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 110849 0.72 0.407463
Target:  5'- -gCGCGGGccGCCCGCGUCGaaccGuCGCCa -3'
miRNA:   3'- caGCGCCCu-CGGGCGCAGUcu--C-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 222644 0.72 0.407463
Target:  5'- -cCGaGGaGGGCCCGCGUC--AGCGCCc -3'
miRNA:   3'- caGCgCC-CUCGGGCGCAGucUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 74718 0.72 0.41552
Target:  5'- -gCGCGGGcGCCUGCGaCAGuAGCGUUc -3'
miRNA:   3'- caGCGCCCuCGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 146568 0.72 0.41552
Target:  5'- cGUCGCGGGuaaggugccGCUCGUGcCGGAGC-CCg -3'
miRNA:   3'- -CAGCGCCCu--------CGGGCGCaGUCUCGcGG- -5'
16200 5' -62.6 NC_004065.1 + 151692 0.71 0.423673
Target:  5'- -gCGCGGGcGCCCugcaucgucuGCGUCGGGuCGCCc -3'
miRNA:   3'- caGCGCCCuCGGG----------CGCAGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 54060 0.71 0.439426
Target:  5'- uUCGCGGGAGCggcaaucuucucaCCGuCGgCAGAGCcagaGCCa -3'
miRNA:   3'- cAGCGCCCUCG-------------GGC-GCaGUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 197786 0.71 0.448697
Target:  5'- aUCGCcGGuGUCCGCGUUGGucaccAGCGCCc -3'
miRNA:   3'- cAGCGcCCuCGGGCGCAGUC-----UCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.