Results 41 - 60 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 195497 | 1.09 | 0.001211 |
Target: 5'- uGUCGCGGGAGCCCGCGUCAGAGCGCCc -3' miRNA: 3'- -CAGCGCCCUCGGGCGCAGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 128401 | 0.69 | 0.528233 |
Target: 5'- -cUGUGGGGGCCgaGCGgcagCGGcggcGGCGCCg -3' miRNA: 3'- caGCGCCCUCGGg-CGCa---GUC----UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 123672 | 0.69 | 0.537415 |
Target: 5'- -aCGUGGcGcgcuGCCCGUG-CAGcAGCGCCg -3' miRNA: 3'- caGCGCC-Cu---CGGGCGCaGUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 127320 | 0.68 | 0.640911 |
Target: 5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3' miRNA: 3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 24972 | 0.68 | 0.640911 |
Target: 5'- gGUCGUGGGugggcgucccucGGCCUuuuGUGUguGGGCGUCc -3' miRNA: 3'- -CAGCGCCC------------UCGGG---CGCAguCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 122720 | 0.68 | 0.637112 |
Target: 5'- uGUUGCGGaugguguagcacuGGCCgUGCGUCGG-GCGCCc -3' miRNA: 3'- -CAGCGCCc------------UCGG-GCGCAGUCuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 163464 | 0.68 | 0.621913 |
Target: 5'- uUCGaUGGGuAGCUCGagcucCGUCGGcGGCGCCg -3' miRNA: 3'- cAGC-GCCC-UCGGGC-----GCAGUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 135674 | 0.68 | 0.593481 |
Target: 5'- cGUCG-GGGGGCUCGCG-CAGAG-GUUc -3' miRNA: 3'- -CAGCgCCCUCGGGCGCaGUCUCgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 46290 | 0.68 | 0.593481 |
Target: 5'- -cCGUGGGcgaccuGGaCCUGUcUCAGGGCGCCu -3' miRNA: 3'- caGCGCCC------UC-GGGCGcAGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 110780 | 0.68 | 0.593481 |
Target: 5'- -gCGCGcG-GCCCGUuUCGGAGCGCa -3' miRNA: 3'- caGCGCcCuCGGGCGcAGUCUCGCGg -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 197124 | 0.69 | 0.584045 |
Target: 5'- aGUUGUGGGGgauGCCCaGCGgCAGAcgcucgccggcGCGCCu -3' miRNA: 3'- -CAGCGCCCU---CGGG-CGCaGUCU-----------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 109828 | 0.69 | 0.578397 |
Target: 5'- cGUCGCcguccugcugcggcgGGGGGCCauCGCG-CAG-GUGCCg -3' miRNA: 3'- -CAGCG---------------CCCUCGG--GCGCaGUCuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 113414 | 0.69 | 0.574638 |
Target: 5'- cGUCGUggccaGGGAG-CUGCG-CAGAGCGgCg -3' miRNA: 3'- -CAGCG-----CCCUCgGGCGCaGUCUCGCgG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 90247 | 0.69 | 0.54665 |
Target: 5'- cGUCgGCGaaGGCCCGCGagagCAGAGUGaCCa -3' miRNA: 3'- -CAG-CGCccUCGGGCGCa---GUCUCGC-GG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 30980 | 0.69 | 0.54665 |
Target: 5'- --aGUGGGAuGCgcucgCCGCGUCGG-GCGCUg -3' miRNA: 3'- cagCGCCCU-CG-----GGCGCAGUCuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 119184 | 0.71 | 0.431922 |
Target: 5'- -aCGCGGGcGGCCCGCGccccgCAcuGGUGCCu -3' miRNA: 3'- caGCGCCC-UCGGGCGCa----GUc-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 32856 | 0.71 | 0.423673 |
Target: 5'- -cCGCgGGGAGCUgGCGUCccuggucgagAGGcGCGCCg -3' miRNA: 3'- caGCG-CCCUCGGgCGCAG----------UCU-CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 87278 | 0.73 | 0.339534 |
Target: 5'- cGUCGCGGGAGagaCCGCuaCAGAagucgagcgagGCGCCc -3' miRNA: 3'- -CAGCGCCCUCg--GGCGcaGUCU-----------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 163017 | 0.73 | 0.332513 |
Target: 5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3' miRNA: 3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 139120 | 0.66 | 0.752474 |
Target: 5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3' miRNA: 3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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