Results 61 - 80 of 97 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 119513 | 0.68 | 0.612421 |
Target: 5'- -gCGCGGcGAGCCUGUcgacauccuuGUcCGGGGCgGCCg -3' miRNA: 3'- caGCGCC-CUCGGGCG----------CA-GUCUCG-CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 163360 | 0.68 | 0.61337 |
Target: 5'- -cUGUgGGGGGCCCgguggcucuccaucaGCGUCAGcgcguccgccacgcAGCGCCg -3' miRNA: 3'- caGCG-CCCUCGGG---------------CGCAGUC--------------UCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 159753 | 0.68 | 0.619064 |
Target: 5'- -cCGCGGGGuugcGCCaguucuuucgcaugUGCGUCAGGGCGgUCa -3' miRNA: 3'- caGCGCCCU----CGG--------------GCGCAGUCUCGC-GG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 78318 | 0.68 | 0.640911 |
Target: 5'- -gCGUGGGcGaCCCGaCGcagacgaugCAGGGCGCCg -3' miRNA: 3'- caGCGCCCuC-GGGC-GCa--------GUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 104315 | 0.67 | 0.649455 |
Target: 5'- --gGCGGGcccGCCCcagggggaugaucGgGUCAGGGCGCUc -3' miRNA: 3'- cagCGCCCu--CGGG-------------CgCAGUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 33615 | 0.67 | 0.649455 |
Target: 5'- -cUGCGGGccggcauggccaaGGCCauCGCGuUCGGGGCGCg -3' miRNA: 3'- caGCGCCC-------------UCGG--GCGC-AGUCUCGCGg -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 60187 | 0.69 | 0.565267 |
Target: 5'- cGUCGCGGuucccGAGCCCGUuaagauccCAGAGC-CCg -3' miRNA: 3'- -CAGCGCC-----CUCGGGCGca------GUCUCGcGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 211904 | 0.69 | 0.555936 |
Target: 5'- -cCGCGGcGGGCCCggagguucuuccGCGaCAGAGaUGCCg -3' miRNA: 3'- caGCGCC-CUCGGG------------CGCaGUCUC-GCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 156289 | 0.69 | 0.555936 |
Target: 5'- --gGCGGGAGUagCgGCGgcagCAGuGGCGCCa -3' miRNA: 3'- cagCGCCCUCG--GgCGCa---GUC-UCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 139120 | 0.66 | 0.752474 |
Target: 5'- -aCGCGGucugcuccGAGCUCGCGuUCAGcuacGCGUCu -3' miRNA: 3'- caGCGCC--------CUCGGGCGC-AGUCu---CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 163017 | 0.73 | 0.332513 |
Target: 5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3' miRNA: 3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 87278 | 0.73 | 0.339534 |
Target: 5'- cGUCGCGGGAGagaCCGCuaCAGAagucgagcgagGCGCCc -3' miRNA: 3'- -CAGCGCCCUCg--GGCGcaGUCU-----------CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 32856 | 0.71 | 0.423673 |
Target: 5'- -cCGCgGGGAGCUgGCGUCccuggucgagAGGcGCGCCg -3' miRNA: 3'- caGCG-CCCUCGGgCGCAG----------UCU-CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 119184 | 0.71 | 0.431922 |
Target: 5'- -aCGCGGGcGGCCCGCGccccgCAcuGGUGCCu -3' miRNA: 3'- caGCGCCC-UCGGGCGCa----GUc-UCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 229494 | 0.71 | 0.465826 |
Target: 5'- cGUCGCGGaAGCUucacaCGCuggCGGGGCGCCu -3' miRNA: 3'- -CAGCGCCcUCGG-----GCGca-GUCUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 101421 | 0.71 | 0.465826 |
Target: 5'- -cCGUGGGGGCggcuggCGCGUgCGGAuGCGCCu -3' miRNA: 3'- caGCGCCCUCGg-----GCGCA-GUCU-CGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 106440 | 0.7 | 0.492136 |
Target: 5'- -gCGCGGGcGCUCGuCGUCGaugcuGGGCGUCg -3' miRNA: 3'- caGCGCCCuCGGGC-GCAGU-----CUCGCGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 184150 | 0.7 | 0.501059 |
Target: 5'- uGUCGCGucuGGGGUCUuccucCGUCGGAGCgGCCa -3' miRNA: 3'- -CAGCGC---CCUCGGGc----GCAGUCUCG-CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 138316 | 0.69 | 0.528233 |
Target: 5'- -aCGCGGGAGCUCGCGgaCAucGUgGCCg -3' miRNA: 3'- caGCGCCCUCGGGCGCa-GUcuCG-CGG- -5' |
|||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 205747 | 0.69 | 0.54665 |
Target: 5'- uGUCGCGGG-G-CCGCGagccgugagcUCAccGAGUGCCg -3' miRNA: 3'- -CAGCGCCCuCgGGCGC----------AGU--CUCGCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home