Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 229494 | 0.71 | 0.465826 |
Target: 5'- cGUCGCGGaAGCUucacaCGCuggCGGGGCGCCu -3' miRNA: 3'- -CAGCGCCcUCGG-----GCGca-GUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 119184 | 0.71 | 0.431922 |
Target: 5'- -aCGCGGGcGGCCCGCGccccgCAcuGGUGCCu -3' miRNA: 3'- caGCGCCC-UCGGGCGCa----GUc-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 32856 | 0.71 | 0.423673 |
Target: 5'- -cCGCgGGGAGCUgGCGUCccuggucgagAGGcGCGCCg -3' miRNA: 3'- caGCG-CCCUCGGgCGCAG----------UCU-CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 87278 | 0.73 | 0.339534 |
Target: 5'- cGUCGCGGGAGagaCCGCuaCAGAagucgagcgagGCGCCc -3' miRNA: 3'- -CAGCGCCCUCg--GGCGcaGUCU-----------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 163017 | 0.73 | 0.332513 |
Target: 5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3' miRNA: 3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 138316 | 0.69 | 0.528233 |
Target: 5'- -aCGCGGGAGCUCGCGgaCAucGUgGCCg -3' miRNA: 3'- caGCGCCCUCGGGCGCa-GUcuCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 205747 | 0.69 | 0.54665 |
Target: 5'- uGUCGCGGG-G-CCGCGagccgugagcUCAccGAGUGCCg -3' miRNA: 3'- -CAGCGCCCuCgGGCGC----------AGU--CUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 156289 | 0.69 | 0.555936 |
Target: 5'- --gGCGGGAGUagCgGCGgcagCAGuGGCGCCa -3' miRNA: 3'- cagCGCCCUCG--GgCGCa---GUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 119513 | 0.68 | 0.612421 |
Target: 5'- -gCGCGGcGAGCCUGUcgacauccuuGUcCGGGGCgGCCg -3' miRNA: 3'- caGCGCC-CUCGGGCG----------CA-GUCUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 4388 | 0.68 | 0.602942 |
Target: 5'- --gGCGGGAGCCggaGUGcuguUCGGAGCggugGCCa -3' miRNA: 3'- cagCGCCCUCGGg--CGC----AGUCUCG----CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 56560 | 0.68 | 0.593481 |
Target: 5'- -cCGCuucGGuGCUgGCGUC-GAGCGCCg -3' miRNA: 3'- caGCGc--CCuCGGgCGCAGuCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 90633 | 0.68 | 0.593481 |
Target: 5'- -gCGCGGGccgucGCgaccccaucagaCCGCGUCgucggugguggAGAGCGCCg -3' miRNA: 3'- caGCGCCCu----CG------------GGCGCAG-----------UCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 230012 | 0.69 | 0.584045 |
Target: 5'- -cCcCGGGGGCCCGCGcgcacUCAGAcgGCCg -3' miRNA: 3'- caGcGCCCUCGGGCGC-----AGUCUcgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 142741 | 0.69 | 0.574638 |
Target: 5'- -aUGgGGGAuaUUGCGaUCAGGGCGCCc -3' miRNA: 3'- caGCgCCCUcgGGCGC-AGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 60187 | 0.69 | 0.565267 |
Target: 5'- cGUCGCGGuucccGAGCCCGUuaagauccCAGAGC-CCg -3' miRNA: 3'- -CAGCGCC-----CUCGGGCGca------GUCUCGcGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 211904 | 0.69 | 0.555936 |
Target: 5'- -cCGCGGcGGGCCCggagguucuuccGCGaCAGAGaUGCCg -3' miRNA: 3'- caGCGCC-CUCGGG------------CGCaGUCUC-GCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 43428 | 0.73 | 0.325598 |
Target: 5'- gGUCcuCGGGAGUa-GCGUaCGGAGCGCCg -3' miRNA: 3'- -CAGc-GCCCUCGggCGCA-GUCUCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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