miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 78318 0.68 0.640911
Target:  5'- -gCGUGGGcGaCCCGaCGcagacgaugCAGGGCGCCg -3'
miRNA:   3'- caGCGCCCuC-GGGC-GCa--------GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 119513 0.68 0.612421
Target:  5'- -gCGCGGcGAGCCUGUcgacauccuuGUcCGGGGCgGCCg -3'
miRNA:   3'- caGCGCC-CUCGGGCG----------CA-GUCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 205747 0.69 0.54665
Target:  5'- uGUCGCGGG-G-CCGCGagccgugagcUCAccGAGUGCCg -3'
miRNA:   3'- -CAGCGCCCuCgGGCGC----------AGU--CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 32856 0.71 0.423673
Target:  5'- -cCGCgGGGAGCUgGCGUCccuggucgagAGGcGCGCCg -3'
miRNA:   3'- caGCG-CCCUCGGgCGCAG----------UCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 3787 0.66 0.725321
Target:  5'- uUCGCGGGcAGCCUGgCGU----GUGCCg -3'
miRNA:   3'- cAGCGCCC-UCGGGC-GCAgucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 137961 0.67 0.669346
Target:  5'- -gCGCGGcccuccGAGCgCGCGUgAGAugccucgagcGCGCCa -3'
miRNA:   3'- caGCGCC------CUCGgGCGCAgUCU----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 56560 0.68 0.593481
Target:  5'- -cCGCuucGGuGCUgGCGUC-GAGCGCCg -3'
miRNA:   3'- caGCGc--CCuCGGgCGCAGuCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 87278 0.73 0.339534
Target:  5'- cGUCGCGGGAGagaCCGCuaCAGAagucgagcgagGCGCCc -3'
miRNA:   3'- -CAGCGCCCUCg--GGCGcaGUCU-----------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 162254 0.67 0.654198
Target:  5'- aGUC-UGGGcGCCCGCGccguucgucacgccgUCGGAcgcgGCGCCg -3'
miRNA:   3'- -CAGcGCCCuCGGGCGC---------------AGUCU----CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 163017 0.73 0.332513
Target:  5'- -cCGCGcGGGGCCCGUa-CAcGGGCGCCg -3'
miRNA:   3'- caGCGC-CCUCGGGCGcaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 4388 0.68 0.602942
Target:  5'- --gGCGGGAGCCggaGUGcuguUCGGAGCggugGCCa -3'
miRNA:   3'- cagCGCCCUCGGg--CGC----AGUCUCG----CGG- -5'
16200 5' -62.6 NC_004065.1 + 104315 0.67 0.649455
Target:  5'- --gGCGGGcccGCCCcagggggaugaucGgGUCAGGGCGCUc -3'
miRNA:   3'- cagCGCCCu--CGGG-------------CgCAGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 142741 0.69 0.574638
Target:  5'- -aUGgGGGAuaUUGCGaUCAGGGCGCCc -3'
miRNA:   3'- caGCgCCCUcgGGCGC-AGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 156289 0.69 0.555936
Target:  5'- --gGCGGGAGUagCgGCGgcagCAGuGGCGCCa -3'
miRNA:   3'- cagCGCCCUCG--GgCGCa---GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 106440 0.7 0.492136
Target:  5'- -gCGCGGGcGCUCGuCGUCGaugcuGGGCGUCg -3'
miRNA:   3'- caGCGCCCuCGGGC-GCAGU-----CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 119184 0.71 0.431922
Target:  5'- -aCGCGGGcGGCCCGCGccccgCAcuGGUGCCu -3'
miRNA:   3'- caGCGCCC-UCGGGCGCa----GUc-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 169256 0.66 0.743504
Target:  5'- --gGCGGGAGgCCGCGgccCuGuGCgGCCu -3'
miRNA:   3'- cagCGCCCUCgGGCGCa--GuCuCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 139902 0.66 0.725321
Target:  5'- -cCGCGGG-GCCUcCGgcCGGcGGCGCCa -3'
miRNA:   3'- caGCGCCCuCGGGcGCa-GUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34536 0.66 0.716123
Target:  5'- -aCGCGGGcuCCCGCGacagCgAGAGCGaCUc -3'
miRNA:   3'- caGCGCCCucGGGCGCa---G-UCUCGC-GG- -5'
16200 5' -62.6 NC_004065.1 + 71478 0.67 0.669346
Target:  5'- cUCGCGauGAGCgUGCGagAGAuGCGCCg -3'
miRNA:   3'- cAGCGCc-CUCGgGCGCagUCU-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.