miRNA display CGI


Results 41 - 60 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 163360 0.68 0.61337
Target:  5'- -cUGUgGGGGGCCCgguggcucuccaucaGCGUCAGcgcguccgccacgcAGCGCCg -3'
miRNA:   3'- caGCG-CCCUCGGG---------------CGCAGUC--------------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 56560 0.68 0.593481
Target:  5'- -cCGCuucGGuGCUgGCGUC-GAGCGCCg -3'
miRNA:   3'- caGCGc--CCuCGGgCGCAGuCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 184907 0.67 0.650404
Target:  5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3'
miRNA:   3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 64875 0.68 0.640911
Target:  5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3'
miRNA:   3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 127320 0.68 0.640911
Target:  5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3'
miRNA:   3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 24972 0.68 0.640911
Target:  5'- gGUCGUGGGugggcgucccucGGCCUuuuGUGUguGGGCGUCc -3'
miRNA:   3'- -CAGCGCCC------------UCGGG---CGCAguCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 66625 0.67 0.650404
Target:  5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3'
miRNA:   3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 99414 0.66 0.752474
Target:  5'- cUCGCagcaGGGGCCCgaGCGgCAGA-CGCCg -3'
miRNA:   3'- cAGCGc---CCUCGGG--CGCaGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 225370 0.67 0.659885
Target:  5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3'
miRNA:   3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145309 0.66 0.743504
Target:  5'- cGUCGCcgcuucGGGuGCCgaGCGacacucgacaCAGGGCGCCu -3'
miRNA:   3'- -CAGCG------CCCuCGGg-CGCa---------GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 145778 0.66 0.740797
Target:  5'- gGUCGCGGGcGCUCGCa-CAGAuccucaugcacgucGgGCCg -3'
miRNA:   3'- -CAGCGCCCuCGGGCGcaGUCU--------------CgCGG- -5'
16200 5' -62.6 NC_004065.1 + 189865 0.66 0.734451
Target:  5'- -cCGCGaGGGGUuuGCugccGUCGGcAGCGUCu -3'
miRNA:   3'- caGCGC-CCUCGggCG----CAGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 88450 0.67 0.659885
Target:  5'- gGUgGCGGucGCCuCGCG-CAGAGagGCCa -3'
miRNA:   3'- -CAgCGCCcuCGG-GCGCaGUCUCg-CGG- -5'
16200 5' -62.6 NC_004065.1 + 30980 0.69 0.54665
Target:  5'- --aGUGGGAuGCgcucgCCGCGUCGG-GCGCUg -3'
miRNA:   3'- cagCGCCCU-CG-----GGCGCAGUCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 123672 0.69 0.537415
Target:  5'- -aCGUGGcGcgcuGCCCGUG-CAGcAGCGCCg -3'
miRNA:   3'- caGCGCC-Cu---CGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 128401 0.69 0.528233
Target:  5'- -cUGUGGGGGCCgaGCGgcagCGGcggcGGCGCCg -3'
miRNA:   3'- caGCGCCCUCGGg-CGCa---GUC----UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 151692 0.71 0.423673
Target:  5'- -gCGCGGGcGCCCugcaucgucuGCGUCGGGuCGCCc -3'
miRNA:   3'- caGCGCCCuCGGG----------CGCAGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 114576 0.66 0.725321
Target:  5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3'
miRNA:   3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 115805 0.66 0.725321
Target:  5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3'
miRNA:   3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5'
16200 5' -62.6 NC_004065.1 + 117407 0.66 0.734451
Target:  5'- -gCGCGcuGGGCUCGCGgcgCGGAGUggcaGCCg -3'
miRNA:   3'- caGCGCc-CUCGGGCGCa--GUCUCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.