miRNA display CGI


Results 61 - 80 of 97 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16200 5' -62.6 NC_004065.1 + 163284 0.71 0.465826
Target:  5'- gGUCGCGacgccgccGGGGUCCGaCGgCAcGGGCGCCa -3'
miRNA:   3'- -CAGCGC--------CCUCGGGC-GCaGU-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 151692 0.71 0.423673
Target:  5'- -gCGCGGGcGCCCugcaucgucuGCGUCGGGuCGCCc -3'
miRNA:   3'- caGCGCCCuCGGG----------CGCAGUCUcGCGG- -5'
16200 5' -62.6 NC_004065.1 + 146568 0.72 0.41552
Target:  5'- cGUCGCGGGuaaggugccGCUCGUGcCGGAGC-CCg -3'
miRNA:   3'- -CAGCGCCCu--------CGGGCGCaGUCUCGcGG- -5'
16200 5' -62.6 NC_004065.1 + 74718 0.72 0.41552
Target:  5'- -gCGCGGGcGCCUGCGaCAGuAGCGUUc -3'
miRNA:   3'- caGCGCCCuCGGGCGCaGUC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 127320 0.68 0.640911
Target:  5'- aGUCGCcGacuGCgCGCGUCaAGAGCGCUc -3'
miRNA:   3'- -CAGCGcCcu-CGgGCGCAG-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 64875 0.68 0.640911
Target:  5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3'
miRNA:   3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 114576 0.66 0.725321
Target:  5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3'
miRNA:   3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 200315 0.66 0.725321
Target:  5'- -aCGCaGGcagagguaccAGCCCGU--CGGGGCGCCg -3'
miRNA:   3'- caGCGcCC----------UCGGGCGcaGUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 76389 0.66 0.725321
Target:  5'- -cCGCGGauGAGCUCGCcgccGUCcgAGuGGCGCCg -3'
miRNA:   3'- caGCGCC--CUCGGGCG----CAG--UC-UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 34239 0.66 0.725321
Target:  5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3'
miRNA:   3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 149703 0.66 0.716123
Target:  5'- -aCGcCGGGGGgCCGCGgcc--GCGCCg -3'
miRNA:   3'- caGC-GCCCUCgGGCGCagucuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 96278 0.66 0.716123
Target:  5'- --gGCGGGgcGGCCagggGCGUCAcGGaCGCCg -3'
miRNA:   3'- cagCGCCC--UCGGg---CGCAGUcUC-GCGG- -5'
16200 5' -62.6 NC_004065.1 + 68583 0.66 0.716123
Target:  5'- -aCGCGGcGG-CgGCGaucCAGAGCGCCg -3'
miRNA:   3'- caGCGCCcUCgGgCGCa--GUCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 100091 0.66 0.715199
Target:  5'- --gGUGGGAGUCCGgGUCuaccucgggaaacAG-GUGCCg -3'
miRNA:   3'- cagCGCCCUCGGGCgCAG-------------UCuCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 125771 0.67 0.697547
Target:  5'- aUCGCGGGguGGCagaGaGUCuuGAGCGCCu -3'
miRNA:   3'- cAGCGCCC--UCGgg-CgCAGu-CUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 35943 0.67 0.697547
Target:  5'- uGUCGCGGccGCagGuCGUCGGAcucGCGCCg -3'
miRNA:   3'- -CAGCGCCcuCGggC-GCAGUCU---CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 88450 0.67 0.659885
Target:  5'- gGUgGCGGucGCCuCGCG-CAGAGagGCCa -3'
miRNA:   3'- -CAgCGCCcuCGG-GCGCaGUCUCg-CGG- -5'
16200 5' -62.6 NC_004065.1 + 225370 0.67 0.659885
Target:  5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3'
miRNA:   3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5'
16200 5' -62.6 NC_004065.1 + 66625 0.67 0.650404
Target:  5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3'
miRNA:   3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5'
16200 5' -62.6 NC_004065.1 + 184907 0.67 0.650404
Target:  5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3'
miRNA:   3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.