Results 81 - 97 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16200 | 5' | -62.6 | NC_004065.1 | + | 34239 | 0.66 | 0.725321 |
Target: 5'- -gCGCaGG-GCCCGCGguccgccauggUCAGcgcgacacGGCGCCg -3' miRNA: 3'- caGCGcCCuCGGGCGC-----------AGUC--------UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 76389 | 0.66 | 0.725321 |
Target: 5'- -cCGCGGauGAGCUCGCcgccGUCcgAGuGGCGCCg -3' miRNA: 3'- caGCGCC--CUCGGGCG----CAG--UC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 200315 | 0.66 | 0.725321 |
Target: 5'- -aCGCaGGcagagguaccAGCCCGU--CGGGGCGCCg -3' miRNA: 3'- caGCGcCC----------UCGGGCGcaGUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 114576 | 0.66 | 0.725321 |
Target: 5'- aUCGCGa---CCCGCGcggCGGAGUGCCc -3' miRNA: 3'- cAGCGCccucGGGCGCa--GUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 35943 | 0.67 | 0.697547 |
Target: 5'- uGUCGCGGccGCagGuCGUCGGAcucGCGCCg -3' miRNA: 3'- -CAGCGCCcuCGggC-GCAGUCU---CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 126255 | 0.67 | 0.697547 |
Target: 5'- --gGCGGaucGAGCCgcccagCGCGuUCAGcAGCGCCu -3' miRNA: 3'- cagCGCC---CUCGG------GCGC-AGUC-UCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 68424 | 0.67 | 0.669346 |
Target: 5'- -cCG-GGGAGCgCGCGUUcGuGUGCCu -3' miRNA: 3'- caGCgCCCUCGgGCGCAGuCuCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 64875 | 0.68 | 0.640911 |
Target: 5'- -cUGCGGaccgcGGCgCGCGUCGGAgaagagcgGCGCCa -3' miRNA: 3'- caGCGCCc----UCGgGCGCAGUCU--------CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 184907 | 0.67 | 0.650404 |
Target: 5'- --aGCGGGcGCCCGgGUggcucgGGAGCgGCCg -3' miRNA: 3'- cagCGCCCuCGGGCgCAg-----UCUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 66625 | 0.67 | 0.650404 |
Target: 5'- -cCGCGGGcugcGGCgCUGCGUggCGGAcGCGCUg -3' miRNA: 3'- caGCGCCC----UCG-GGCGCA--GUCU-CGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 225370 | 0.67 | 0.659885 |
Target: 5'- uGUCuCuGGAcGCCCGCGgcgGGGGCGCUg -3' miRNA: 3'- -CAGcGcCCU-CGGGCGCag-UCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 88450 | 0.67 | 0.659885 |
Target: 5'- gGUgGCGGucGCCuCGCG-CAGAGagGCCa -3' miRNA: 3'- -CAgCGCCcuCGG-GCGCaGUCUCg-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 170605 | 0.67 | 0.659885 |
Target: 5'- uGUCGuCGGaGAcauugGCCgGCGUCAGGGaCGUg -3' miRNA: 3'- -CAGC-GCC-CU-----CGGgCGCAGUCUC-GCGg -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 101822 | 0.67 | 0.66651 |
Target: 5'- gGUgGCGGGAcuggcacuaguaauGCUCGCG--GGGGCGUCg -3' miRNA: 3'- -CAgCGCCCU--------------CGGGCGCagUCUCGCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 136856 | 0.67 | 0.669346 |
Target: 5'- uGUCGCGGGAcggauGCCgcggucaGCGUCAGAa-GCUg -3' miRNA: 3'- -CAGCGCCCU-----CGGg------CGCAGUCUcgCGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 68165 | 0.67 | 0.669346 |
Target: 5'- aUCGCGGcGGcGCgCGCGaCGGAGCuGUCg -3' miRNA: 3'- cAGCGCC-CU-CGgGCGCaGUCUCG-CGG- -5' |
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16200 | 5' | -62.6 | NC_004065.1 | + | 115805 | 0.66 | 0.725321 |
Target: 5'- aUCGUGGG-GCUgcaGCGUCAgGAGCuGUCu -3' miRNA: 3'- cAGCGCCCuCGGg--CGCAGU-CUCG-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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