miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 3' -59.4 NC_004065.1 + 129058 0.66 0.849723
Target:  5'- -cGcCCAGgUUGUCUGCGUuuuaUGUCCCu -3'
miRNA:   3'- uaCcGGUCgAACAGGCGCA----GCAGGGu -5'
16201 3' -59.4 NC_004065.1 + 28338 0.66 0.82606
Target:  5'- -gGGCC----UGUCCGCGUUGUgCCGc -3'
miRNA:   3'- uaCCGGucgaACAGGCGCAGCAgGGU- -5'
16201 3' -59.4 NC_004065.1 + 90330 0.66 0.817837
Target:  5'- -cGGCaAGCgcGUCCGCGaacUCGUCCg- -3'
miRNA:   3'- uaCCGgUCGaaCAGGCGC---AGCAGGgu -5'
16201 3' -59.4 NC_004065.1 + 155106 0.67 0.79226
Target:  5'- -aGGCCAGCUccccCUGCGUCG-CCUu -3'
miRNA:   3'- uaCCGGUCGAaca-GGCGCAGCaGGGu -5'
16201 3' -59.4 NC_004065.1 + 225450 0.67 0.79226
Target:  5'- aAUGGCCGGUguuaaCCaaGUUGUCCCAu -3'
miRNA:   3'- -UACCGGUCGaaca-GGcgCAGCAGGGU- -5'
16201 3' -59.4 NC_004065.1 + 1924 0.67 0.774528
Target:  5'- cUGGuCCAGUcUG-CgGCGUCGUCuCCAc -3'
miRNA:   3'- uACC-GGUCGaACaGgCGCAGCAG-GGU- -5'
16201 3' -59.4 NC_004065.1 + 78672 0.67 0.765481
Target:  5'- -cGGCCGGCg---CCGCGgCG-CCCGa -3'
miRNA:   3'- uaCCGGUCGaacaGGCGCaGCaGGGU- -5'
16201 3' -59.4 NC_004065.1 + 164414 0.68 0.718767
Target:  5'- cUGGuCCAGCgUGaaCGCGaugUCGUCCCAc -3'
miRNA:   3'- uACC-GGUCGaACagGCGC---AGCAGGGU- -5'
16201 3' -59.4 NC_004065.1 + 19780 0.69 0.699543
Target:  5'- gAUGGgCAGUUcgagucGUCCGCGgUCGUCUCGu -3'
miRNA:   3'- -UACCgGUCGAa-----CAGGCGC-AGCAGGGU- -5'
16201 3' -59.4 NC_004065.1 + 158938 0.7 0.615271
Target:  5'- -aGGCCAGUUUGUucuguuuggucaggaUCGCGUCG-CUCAg -3'
miRNA:   3'- uaCCGGUCGAACA---------------GGCGCAGCaGGGU- -5'
16201 3' -59.4 NC_004065.1 + 73557 0.7 0.601516
Target:  5'- -aGGCgAGUUUGUCCucGUGUCcUCCCAu -3'
miRNA:   3'- uaCCGgUCGAACAGG--CGCAGcAGGGU- -5'
16201 3' -59.4 NC_004065.1 + 29819 0.71 0.58194
Target:  5'- -cGGCCAGgUcGUCCggagauuccgagGCGUCGUUCCGa -3'
miRNA:   3'- uaCCGGUCgAaCAGG------------CGCAGCAGGGU- -5'
16201 3' -59.4 NC_004065.1 + 123547 0.72 0.496129
Target:  5'- gGUGGCCAGCgccgcGUCCuCGUCGUacgggucgacgCCCAg -3'
miRNA:   3'- -UACCGGUCGaa---CAGGcGCAGCA-----------GGGU- -5'
16201 3' -59.4 NC_004065.1 + 163879 0.74 0.399881
Target:  5'- -cGGCCAGCUggcgccgGUCCGCGg---CCCAg -3'
miRNA:   3'- uaCCGGUCGAa------CAGGCGCagcaGGGU- -5'
16201 3' -59.4 NC_004065.1 + 196211 1.06 0.003154
Target:  5'- gAUGGCCAGCUUGUCCGCGUCGUCCCAc -3'
miRNA:   3'- -UACCGGUCGAACAGGCGCAGCAGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.