miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 119311 0.66 0.801256
Target:  5'- uUCGGGUCGAGGGUGGcggcucucgCCCugGGCaGCu -3'
miRNA:   3'- cAGCCCGGCUUUCGCCa--------GGG--CCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 126412 0.66 0.801256
Target:  5'- cGUCa-GCUGcccGCGGUCCCGGCuGCg -3'
miRNA:   3'- -CAGccCGGCuuuCGCCAGGGCCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 106556 0.66 0.801255
Target:  5'- cGUgGGGCuCGcAgcGCGGgucgCUgGGCGACg -3'
miRNA:   3'- -CAgCCCG-GC-UuuCGCCa---GGgCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 139877 0.66 0.792824
Target:  5'- --aGGGuCCGugacGGUGGUCCgGGUGAg -3'
miRNA:   3'- cagCCC-GGCuu--UCGCCAGGgCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 76740 0.66 0.792824
Target:  5'- -gCGGGgaCGGgcGCGG-CgCCGGCGGCc -3'
miRNA:   3'- caGCCCg-GCUuuCGCCaG-GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 26861 0.66 0.792823
Target:  5'- -cUGGaaGUCGAGAGaCGGUCCUcgggucgcgagGGCGGCa -3'
miRNA:   3'- caGCC--CGGCUUUC-GCCAGGG-----------CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 107767 0.66 0.792823
Target:  5'- gGUCGGuGUCGGc-GCGGgagCagCGGCGACa -3'
miRNA:   3'- -CAGCC-CGGCUuuCGCCa--Gg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 135715 0.66 0.784265
Target:  5'- -cCGGGCUGcgGGCGGggaUCUGGUGGa -3'
miRNA:   3'- caGCCCGGCuuUCGCCa--GGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 171280 0.66 0.784265
Target:  5'- aUCGGGCCcGccGUcucuaGUCCUGGCGAUg -3'
miRNA:   3'- cAGCCCGGcUuuCGc----CAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 102156 0.66 0.784264
Target:  5'- cUCGGGCaCGGuga-GGUaCCUGGCGAg -3'
miRNA:   3'- cAGCCCG-GCUuucgCCA-GGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 120135 0.66 0.784264
Target:  5'- -cCGGGaccccCCGAc-GCGG-CCgCGGCGACg -3'
miRNA:   3'- caGCCC-----GGCUuuCGCCaGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 165857 0.66 0.783402
Target:  5'- --gGGGCCGGAcGGUcucucacGGUCCCgaaGGCGAg -3'
miRNA:   3'- cagCCCGGCUU-UCG-------CCAGGG---CCGCUg -5'
16201 5' -61.4 NC_004065.1 + 107173 0.66 0.780807
Target:  5'- gGUgGGGCUGGAcGCGGUCgucaaggacaagaCGcGCGACu -3'
miRNA:   3'- -CAgCCCGGCUUuCGCCAGg------------GC-CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 1811 0.66 0.775586
Target:  5'- -gCGGcGgCGAucGCGGUUCCcguGGUGACg -3'
miRNA:   3'- caGCC-CgGCUuuCGCCAGGG---CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 113627 0.66 0.775586
Target:  5'- --gGGGCUGGAAGCGGacCCCGuCGuCg -3'
miRNA:   3'- cagCCCGGCUUUCGCCa-GGGCcGCuG- -5'
16201 5' -61.4 NC_004065.1 + 120886 0.66 0.775586
Target:  5'- --gGGGUC-AGGGCGGcgucUCgCGGCGACa -3'
miRNA:   3'- cagCCCGGcUUUCGCC----AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 194440 0.66 0.775586
Target:  5'- -cCGGGCgccuCGGucgAAGCGGUUgggcaCGGCGGCg -3'
miRNA:   3'- caGCCCG----GCU---UUCGCCAGg----GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 30092 0.66 0.770324
Target:  5'- -gCGaGGCC---AGCGGUagcgagagcugcagcCCCGGCGGCc -3'
miRNA:   3'- caGC-CCGGcuuUCGCCA---------------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 18040 0.66 0.766794
Target:  5'- cGUCGGGCUGcgcGAGGuCGaGUCUgaucucgacgaUGGCGGCa -3'
miRNA:   3'- -CAGCCCGGC---UUUC-GC-CAGG-----------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 119997 0.66 0.766794
Target:  5'- -gCGGGUgGAAgaacacggcgGGCGGUgCCGGCuGAa -3'
miRNA:   3'- caGCCCGgCUU----------UCGCCAgGGCCG-CUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.