miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 114831 0.68 0.683851
Target:  5'- cGUCGcggcggccacGGCCGGAuccagGGCcaUCCUGGCGACg -3'
miRNA:   3'- -CAGC----------CCGGCUU-----UCGccAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 207054 0.68 0.645689
Target:  5'- aUCGGGgCGAucucGGgGGUUuccgccucgaugCCGGCGACa -3'
miRNA:   3'- cAGCCCgGCUu---UCgCCAG------------GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 32341 0.68 0.664817
Target:  5'- cGUCGaGUCGAGcGGCGGUCgguaCGGCGAg -3'
miRNA:   3'- -CAGCcCGGCUU-UCGCCAGg---GCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 208004 0.68 0.693316
Target:  5'- --gGGGCCGu-GGCcgGGUUagugCCGGCGGCg -3'
miRNA:   3'- cagCCCGGCuuUCG--CCAG----GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 99674 0.68 0.664817
Target:  5'- -gCGGcGCCGAcAGCG--UCCGGUGACa -3'
miRNA:   3'- caGCC-CGGCUuUCGCcaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 94597 0.68 0.664817
Target:  5'- uGUCGcaGCCGAAccAGCGGUCCgauCGGCuccuGACg -3'
miRNA:   3'- -CAGCc-CGGCUU--UCGCCAGG---GCCG----CUG- -5'
16201 5' -61.4 NC_004065.1 + 128406 0.68 0.664817
Target:  5'- --gGGGCCGA--GCGG-CagCGGCGGCg -3'
miRNA:   3'- cagCCCGGCUuuCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 168632 0.68 0.693317
Target:  5'- -cUGGuGCCGcgGGCGGagCCGGCGcgGCg -3'
miRNA:   3'- caGCC-CGGCuuUCGCCagGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 55782 0.68 0.664817
Target:  5'- cUCGGcGCCGAgcAGGCGaUCgCGGCuGACg -3'
miRNA:   3'- cAGCC-CGGCU--UUCGCcAGgGCCG-CUG- -5'
16201 5' -61.4 NC_004065.1 + 62345 0.68 0.687643
Target:  5'- cUCGGGCUGGGucgucgguuuucgacGGCGGUggCGGCGGg -3'
miRNA:   3'- cAGCCCGGCUU---------------UCGCCAggGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 68142 0.68 0.655261
Target:  5'- uGUCGGacgaGCUGGAcGCGGugaUCgCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUUuCGCC---AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 25882 0.68 0.655261
Target:  5'- aUCGGGgaCGAAGGUuaucacGGcCCCGGCGGg -3'
miRNA:   3'- cAGCCCg-GCUUUCG------CCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 72919 0.68 0.64569
Target:  5'- ----cGCUGAAGGCGccCCCGGCGGCg -3'
miRNA:   3'- cagccCGGCUUUCGCcaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 151090 0.69 0.636108
Target:  5'- -gCGGGCCuGguGGCGcccgagCUCGGCGACg -3'
miRNA:   3'- caGCCCGG-CuuUCGCca----GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 37490 0.69 0.636108
Target:  5'- --aGGGCUGu--GCGGaccCCUGGCGGCu -3'
miRNA:   3'- cagCCCGGCuuuCGCCa--GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 182436 0.69 0.59782
Target:  5'- -cUGGGCagccGGgGGUCCUGGUGACg -3'
miRNA:   3'- caGCCCGgcuuUCgCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 82831 0.69 0.636108
Target:  5'- cGUCGGgaaGCCgGAGAGCaGGUacuugCCGGUGGCg -3'
miRNA:   3'- -CAGCC---CGG-CUUUCG-CCAg----GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 106321 0.69 0.626524
Target:  5'- uUCGGGCgcaagaCGGAcaagGGCGG-CCCGGCGcuGCu -3'
miRNA:   3'- cAGCCCG------GCUU----UCGCCaGGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 123449 0.69 0.588288
Target:  5'- -aCGGGCCGAAcaGGUGaUgUCGGUGACg -3'
miRNA:   3'- caGCCCGGCUU--UCGCcAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.