miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 31076 0.69 0.587336
Target:  5'- cUCGcGGCUGGuggccacGGGCGGcgaucagaacgCCCGGCGGCg -3'
miRNA:   3'- cAGC-CCGGCU-------UUCGCCa----------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 83170 0.7 0.569314
Target:  5'- -aCGcGCCGAugcagaccAGGCGcUCCCGGCGGCc -3'
miRNA:   3'- caGCcCGGCU--------UUCGCcAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 165098 0.7 0.569313
Target:  5'- --aGGcGCCGucgucucuGAGGCGGcgucccgCCCGGCGACu -3'
miRNA:   3'- cagCC-CGGC--------UUUCGCCa------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 141613 0.7 0.559882
Target:  5'- -gCGGGCuccgcugccggCGguGGCGG-CUCGGCGACg -3'
miRNA:   3'- caGCCCG-----------GCuuUCGCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 136616 0.7 0.550494
Target:  5'- -gCGGGgcgcugguCCGAGgcGGCGGUCCgGaGCGGCg -3'
miRNA:   3'- caGCCC--------GGCUU--UCGCCAGGgC-CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 176325 0.7 0.550494
Target:  5'- --gGGGagGAGGGCGGUCgggCGGCGACa -3'
miRNA:   3'- cagCCCggCUUUCGCCAGg--GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 99376 0.7 0.550494
Target:  5'- cGUUGGGCaugaCGGgcGUGGgcugCCUGGCGGCg -3'
miRNA:   3'- -CAGCCCG----GCUuuCGCCa---GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 163356 0.7 0.559882
Target:  5'- --gGGGCUGugGGgGG-CCCGGUGGCu -3'
miRNA:   3'- cagCCCGGCuuUCgCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 32826 0.71 0.486398
Target:  5'- cGUCGGGCCGcucguccgagaagguGAGcCGGUCCagcgcguUGGCGAUg -3'
miRNA:   3'- -CAGCCCGGCu--------------UUC-GCCAGG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 68745 0.71 0.513479
Target:  5'- gGUCGcuGCCGGAcucggacaucgcGGCGGUgCUGGCGGCc -3'
miRNA:   3'- -CAGCc-CGGCUU------------UCGCCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 70798 0.71 0.503474
Target:  5'- --gGGGCCuGGAGUGGacgacggaauucaUCCUGGCGGCg -3'
miRNA:   3'- cagCCCGGcUUUCGCC-------------AGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 139853 0.71 0.477522
Target:  5'- -gCGGGCgacggCGGAGGCGGcggagCCGGCGGCa -3'
miRNA:   3'- caGCCCG-----GCUUUCGCCag---GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 153611 0.71 0.494453
Target:  5'- aUCGGGUCGGcucGGGCGGcgCCacucggaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU---UUCGCCa-GG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 104894 0.71 0.495352
Target:  5'- -aCGcGGCUGGGcgacggcgcGGUGGUgCCGGCGGCg -3'
miRNA:   3'- caGC-CCGGCUU---------UCGCCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 116314 0.71 0.495352
Target:  5'- uGUCGGcGUCGgcGGCGG-CagCGGCGACg -3'
miRNA:   3'- -CAGCC-CGGCuuUCGCCaGg-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 111865 0.72 0.426059
Target:  5'- -aCGGccGCCGcc-GCGGUCUCGGUGACa -3'
miRNA:   3'- caGCC--CGGCuuuCGCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 41498 0.72 0.460015
Target:  5'- cGUCGGGaCGGggagcgcgcGGGCGGUCCCGccagagucGCGGCc -3'
miRNA:   3'- -CAGCCCgGCU---------UUCGCCAGGGC--------CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 74837 0.72 0.442853
Target:  5'- gGUCGGGaCCGAGGGgcgcaGGUUgaGGCGGCg -3'
miRNA:   3'- -CAGCCC-GGCUUUCg----CCAGggCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 154786 0.72 0.417806
Target:  5'- cUCGGGCgCGAAuGCGGUCgCGuaGACu -3'
miRNA:   3'- cAGCCCG-GCUUuCGCCAGgGCcgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.