Results 1 - 20 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16201 | 5' | -61.4 | NC_004065.1 | + | 196246 | 1.09 | 0.001621 |
Target: 5'- uGUCGGGCCGAAAGCGGUCCCGGCGACa -3' miRNA: 3'- -CAGCCCGGCUUUCGCCAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 197378 | 0.76 | 0.250778 |
Target: 5'- -gCGGGCCGu-GGCGauguugacaggcaGUCCCGGUGACg -3' miRNA: 3'- caGCCCGGCuuUCGC-------------CAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 213464 | 0.75 | 0.319916 |
Target: 5'- cUCGGGCUGAgguguagucgGAGCGGUCgCC-GCGACc -3' miRNA: 3'- cAGCCCGGCU----------UUCGCCAG-GGcCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 203000 | 0.74 | 0.362863 |
Target: 5'- aUCGGGUgGAGGGUGGUaagaUUGGCGGCg -3' miRNA: 3'- cAGCCCGgCUUUCGCCAg---GGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 43577 | 0.73 | 0.373443 |
Target: 5'- -aCGGGCCugccucuggcguggaGGAAGaUGGUCCCGGUGAg -3' miRNA: 3'- caGCCCGG---------------CUUUC-GCCAGGGCCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 55346 | 0.73 | 0.39364 |
Target: 5'- -aCGGacCCGAcgGAGaacgaGGUCCCGGCGACg -3' miRNA: 3'- caGCCc-GGCU--UUCg----CCAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 136401 | 0.73 | 0.39364 |
Target: 5'- gGUCGGuaGCCgGGGAGCuGGUCCUGGgGGCc -3' miRNA: 3'- -CAGCC--CGG-CUUUCG-CCAGGGCCgCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 149031 | 0.73 | 0.39364 |
Target: 5'- cUCGGGCUGAccucggGAGCGGgcgacgaCGGCGGCg -3' miRNA: 3'- cAGCCCGGCU------UUCGCCagg----GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 150903 | 0.72 | 0.460015 |
Target: 5'- cGUCGGGaacaagggguCCGAcGGCGGcUCCGGCGGg -3' miRNA: 3'- -CAGCCC----------GGCUuUCGCCaGGGCCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 157717 | 0.72 | 0.460015 |
Target: 5'- cGUCGGGaCC----GCGGUCgCGGCGAUg -3' miRNA: 3'- -CAGCCC-GGcuuuCGCCAGgGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 41498 | 0.72 | 0.460015 |
Target: 5'- cGUCGGGaCGGggagcgcgcGGGCGGUCCCGccagagucGCGGCc -3' miRNA: 3'- -CAGCCCgGCU---------UUCGCCAGGGC--------CGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 154786 | 0.72 | 0.417806 |
Target: 5'- cUCGGGCgCGAAuGCGGUCgCGuaGACu -3' miRNA: 3'- cAGCCCG-GCUUuCGCCAGgGCcgCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 198021 | 0.72 | 0.460014 |
Target: 5'- cUCGGaGgCGGucGCGGUCgCCGGCGGu -3' miRNA: 3'- cAGCC-CgGCUuuCGCCAG-GGCCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 111865 | 0.72 | 0.426059 |
Target: 5'- -aCGGccGCCGcc-GCGGUCUCGGUGACa -3' miRNA: 3'- caGCC--CGGCuuuCGCCAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 74837 | 0.72 | 0.442853 |
Target: 5'- gGUCGGGaCCGAGGGgcgcaGGUUgaGGCGGCg -3' miRNA: 3'- -CAGCCC-GGCUUUCg----CCAGggCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 153611 | 0.71 | 0.494453 |
Target: 5'- aUCGGGUCGGcucGGGCGGcgCCacucggaCGGCGGCg -3' miRNA: 3'- cAGCCCGGCU---UUCGCCa-GG-------GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 139853 | 0.71 | 0.477522 |
Target: 5'- -gCGGGCgacggCGGAGGCGGcggagCCGGCGGCa -3' miRNA: 3'- caGCCCG-----GCUUUCGCCag---GGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 68745 | 0.71 | 0.513479 |
Target: 5'- gGUCGcuGCCGGAcucggacaucgcGGCGGUgCUGGCGGCc -3' miRNA: 3'- -CAGCc-CGGCUU------------UCGCCAgGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 32826 | 0.71 | 0.486398 |
Target: 5'- cGUCGGGCCGcucguccgagaagguGAGcCGGUCCagcgcguUGGCGAUg -3' miRNA: 3'- -CAGCCCGGCu--------------UUC-GCCAGG-------GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 70798 | 0.71 | 0.503474 |
Target: 5'- --gGGGCCuGGAGUGGacgacggaauucaUCCUGGCGGCg -3' miRNA: 3'- cagCCCGGcUUUCGCC-------------AGGGCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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