miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 70798 0.71 0.503474
Target:  5'- --gGGGCCuGGAGUGGacgacggaauucaUCCUGGCGGCg -3'
miRNA:   3'- cagCCCGGcUUUCGCC-------------AGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 68745 0.71 0.513479
Target:  5'- gGUCGcuGCCGGAcucggacaucgcGGCGGUgCUGGCGGCc -3'
miRNA:   3'- -CAGCc-CGGCUU------------UCGCCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 165098 0.7 0.569313
Target:  5'- --aGGcGCCGucgucucuGAGGCGGcgucccgCCCGGCGACu -3'
miRNA:   3'- cagCC-CGGC--------UUUCGCCa------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 141613 0.7 0.559882
Target:  5'- -gCGGGCuccgcugccggCGguGGCGG-CUCGGCGACg -3'
miRNA:   3'- caGCCCG-----------GCuuUCGCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 163356 0.7 0.559882
Target:  5'- --gGGGCUGugGGgGG-CCCGGUGGCu -3'
miRNA:   3'- cagCCCGGCuuUCgCCaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 136616 0.7 0.550494
Target:  5'- -gCGGGgcgcugguCCGAGgcGGCGGUCCgGaGCGGCg -3'
miRNA:   3'- caGCCC--------GGCUU--UCGCCAGGgC-CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 99376 0.7 0.550494
Target:  5'- cGUUGGGCaugaCGGgcGUGGgcugCCUGGCGGCg -3'
miRNA:   3'- -CAGCCCG----GCUuuCGCCa---GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 176325 0.7 0.550494
Target:  5'- --gGGGagGAGGGCGGUCgggCGGCGACa -3'
miRNA:   3'- cagCCCggCUUUCGCCAGg--GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 83170 0.7 0.569314
Target:  5'- -aCGcGCCGAugcagaccAGGCGcUCCCGGCGGCc -3'
miRNA:   3'- caGCcCGGCU--------UUCGCcAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 123449 0.69 0.588288
Target:  5'- -aCGGGCCGAAcaGGUGaUgUCGGUGACg -3'
miRNA:   3'- caGCCCGGCUU--UCGCcAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 182436 0.69 0.59782
Target:  5'- -cUGGGCagccGGgGGUCCUGGUGACg -3'
miRNA:   3'- caGCCCGgcuuUCgCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 37490 0.69 0.636108
Target:  5'- --aGGGCUGu--GCGGaccCCUGGCGGCu -3'
miRNA:   3'- cagCCCGGCuuuCGCCa--GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 151090 0.69 0.636108
Target:  5'- -gCGGGCCuGguGGCGcccgagCUCGGCGACg -3'
miRNA:   3'- caGCCCGG-CuuUCGCca----GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 109885 0.69 0.626524
Target:  5'- cGUCGccgcGGCCGcgucGGGgGGUCCCGGCu-- -3'
miRNA:   3'- -CAGC----CCGGCu---UUCgCCAGGGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 82831 0.69 0.636108
Target:  5'- cGUCGGgaaGCCgGAGAGCaGGUacuugCCGGUGGCg -3'
miRNA:   3'- -CAGCC---CGG-CUUUCG-CCAg----GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 106321 0.69 0.626524
Target:  5'- uUCGGGCgcaagaCGGAcaagGGCGG-CCCGGCGcuGCu -3'
miRNA:   3'- cAGCCCG------GCUU----UCGCCaGGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 31076 0.69 0.587336
Target:  5'- cUCGcGGCUGGuggccacGGGCGGcgaucagaacgCCCGGCGGCg -3'
miRNA:   3'- cAGC-CCGGCU-------UUCGCCa----------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 168632 0.68 0.693317
Target:  5'- -cUGGuGCCGcgGGCGGagCCGGCGcgGCg -3'
miRNA:   3'- caGCC-CGGCuuUCGCCagGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 62345 0.68 0.687643
Target:  5'- cUCGGGCUGGGucgucgguuuucgacGGCGGUggCGGCGGg -3'
miRNA:   3'- cAGCCCGGCUU---------------UCGCCAggGCCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.