miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 55782 0.68 0.664817
Target:  5'- cUCGGcGCCGAgcAGGCGaUCgCGGCuGACg -3'
miRNA:   3'- cAGCC-CGGCU--UUCGCcAGgGCCG-CUG- -5'
16201 5' -61.4 NC_004065.1 + 68142 0.68 0.655261
Target:  5'- uGUCGGacgaGCUGGAcGCGGugaUCgCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUUuCGCC---AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 25882 0.68 0.655261
Target:  5'- aUCGGGgaCGAAGGUuaucacGGcCCCGGCGGg -3'
miRNA:   3'- cAGCCCg-GCUUUCG------CCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 72919 0.68 0.64569
Target:  5'- ----cGCUGAAGGCGccCCCGGCGGCg -3'
miRNA:   3'- cagccCGGCUUUCGCcaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 62345 0.68 0.687643
Target:  5'- cUCGGGCUGGGucgucgguuuucgacGGCGGUggCGGCGGg -3'
miRNA:   3'- cAGCCCGGCUU---------------UCGCCAggGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 176474 0.68 0.693316
Target:  5'- uGUCGGGCa-GAGGCGGaggCaCCGG-GACg -3'
miRNA:   3'- -CAGCCCGgcUUUCGCCa--G-GGCCgCUG- -5'
16201 5' -61.4 NC_004065.1 + 114831 0.68 0.683851
Target:  5'- cGUCGcggcggccacGGCCGGAuccagGGCcaUCCUGGCGACg -3'
miRNA:   3'- -CAGC----------CCGGCUU-----UCGccAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 168632 0.68 0.693317
Target:  5'- -cUGGuGCCGcgGGCGGagCCGGCGcgGCg -3'
miRNA:   3'- caGCC-CGGCuuUCGCCagGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 129560 0.68 0.645689
Target:  5'- aUCGGGCCGAugccGGUGuUCCgGGUGGa -3'
miRNA:   3'- cAGCCCGGCUu---UCGCcAGGgCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 207054 0.68 0.645689
Target:  5'- aUCGGGgCGAucucGGgGGUUuccgccucgaugCCGGCGACa -3'
miRNA:   3'- cAGCCCgGCUu---UCgCCAG------------GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 32341 0.68 0.664817
Target:  5'- cGUCGaGUCGAGcGGCGGUCgguaCGGCGAg -3'
miRNA:   3'- -CAGCcCGGCUU-UCGCCAGg---GCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 94597 0.68 0.664817
Target:  5'- uGUCGcaGCCGAAccAGCGGUCCgauCGGCuccuGACg -3'
miRNA:   3'- -CAGCc-CGGCUU--UCGCCAGG---GCCG----CUG- -5'
16201 5' -61.4 NC_004065.1 + 99674 0.68 0.664817
Target:  5'- -gCGGcGCCGAcAGCG--UCCGGUGACa -3'
miRNA:   3'- caGCC-CGGCUuUCGCcaGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 162283 0.67 0.730654
Target:  5'- uUCGGGCgguugcucgUGAacGAGCGGUCgcucgucaCGGCGAUa -3'
miRNA:   3'- cAGCCCG---------GCU--UUCGCCAGg-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 223213 0.67 0.721413
Target:  5'- -aCGGGaguCGucGGCGGUagCGGCGACg -3'
miRNA:   3'- caGCCCg--GCuuUCGCCAggGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 184885 0.67 0.748904
Target:  5'- -cCGGGaacgagagaggaUCGGGAGCGGgcgCCCgGGUGGCu -3'
miRNA:   3'- caGCCC------------GGCUUUCGCCa--GGG-CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 201419 0.67 0.721413
Target:  5'- -gCGGGUCGGGAGUGGaaccacagcUCCUGGuCGGg -3'
miRNA:   3'- caGCCCGGCUUUCGCC---------AGGGCC-GCUg -5'
16201 5' -61.4 NC_004065.1 + 35597 0.67 0.712105
Target:  5'- cGUCGGcgguGUCGGu-GCGGgaUCCaCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUuuCGCC--AGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 197939 0.67 0.73982
Target:  5'- gGUCGGcgaGUCG-AAGCGGUCgCGGCa-- -3'
miRNA:   3'- -CAGCC---CGGCuUUCGCCAGgGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 200577 0.67 0.730654
Target:  5'- -aCGGGUgGAGaagGGUGGUCgCGGCGu- -3'
miRNA:   3'- caGCCCGgCUU---UCGCCAGgGCCGCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.