Results 81 - 91 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16201 | 5' | -61.4 | NC_004065.1 | + | 171280 | 0.66 | 0.784265 |
Target: 5'- aUCGGGCCcGccGUcucuaGUCCUGGCGAUg -3' miRNA: 3'- cAGCCCGGcUuuCGc----CAGGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 135715 | 0.66 | 0.784265 |
Target: 5'- -cCGGGCUGcgGGCGGggaUCUGGUGGa -3' miRNA: 3'- caGCCCGGCuuUCGCCa--GGGCCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 165857 | 0.66 | 0.783402 |
Target: 5'- --gGGGCCGGAcGGUcucucacGGUCCCgaaGGCGAg -3' miRNA: 3'- cagCCCGGCUU-UCG-------CCAGGG---CCGCUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 194440 | 0.66 | 0.775586 |
Target: 5'- -cCGGGCgccuCGGucgAAGCGGUUgggcaCGGCGGCg -3' miRNA: 3'- caGCCCG----GCU---UUCGCCAGg----GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 120886 | 0.66 | 0.775586 |
Target: 5'- --gGGGUC-AGGGCGGcgucUCgCGGCGACa -3' miRNA: 3'- cagCCCGGcUUUCGCC----AGgGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 113627 | 0.66 | 0.775586 |
Target: 5'- --gGGGCUGGAAGCGGacCCCGuCGuCg -3' miRNA: 3'- cagCCCGGCUUUCGCCa-GGGCcGCuG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 1811 | 0.66 | 0.775586 |
Target: 5'- -gCGGcGgCGAucGCGGUUCCcguGGUGACg -3' miRNA: 3'- caGCC-CgGCUuuCGCCAGGG---CCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 30092 | 0.66 | 0.770324 |
Target: 5'- -gCGaGGCC---AGCGGUagcgagagcugcagcCCCGGCGGCc -3' miRNA: 3'- caGC-CCGGcuuUCGCCA---------------GGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 119997 | 0.66 | 0.766794 |
Target: 5'- -gCGGGUgGAAgaacacggcgGGCGGUgCCGGCuGAa -3' miRNA: 3'- caGCCCGgCUU----------UCGCCAgGGCCG-CUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 128767 | 0.66 | 0.757898 |
Target: 5'- -gCGGcagcGuuGAGGGCGccGUCgCCGGCGGCa -3' miRNA: 3'- caGCC----CggCUUUCGC--CAG-GGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 106556 | 0.66 | 0.801255 |
Target: 5'- cGUgGGGCuCGcAgcGCGGgucgCUgGGCGACg -3' miRNA: 3'- -CAgCCCG-GC-UuuCGCCa---GGgCCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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