miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 196246 1.09 0.001621
Target:  5'- uGUCGGGCCGAAAGCGGUCCCGGCGACa -3'
miRNA:   3'- -CAGCCCGGCUUUCGCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 197378 0.76 0.250778
Target:  5'- -gCGGGCCGu-GGCGauguugacaggcaGUCCCGGUGACg -3'
miRNA:   3'- caGCCCGGCuuUCGC-------------CAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 213464 0.75 0.319916
Target:  5'- cUCGGGCUGAgguguagucgGAGCGGUCgCC-GCGACc -3'
miRNA:   3'- cAGCCCGGCU----------UUCGCCAG-GGcCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 203000 0.74 0.362863
Target:  5'- aUCGGGUgGAGGGUGGUaagaUUGGCGGCg -3'
miRNA:   3'- cAGCCCGgCUUUCGCCAg---GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 43577 0.73 0.373443
Target:  5'- -aCGGGCCugccucuggcguggaGGAAGaUGGUCCCGGUGAg -3'
miRNA:   3'- caGCCCGG---------------CUUUC-GCCAGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 149031 0.73 0.39364
Target:  5'- cUCGGGCUGAccucggGAGCGGgcgacgaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU------UUCGCCagg----GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 55346 0.73 0.39364
Target:  5'- -aCGGacCCGAcgGAGaacgaGGUCCCGGCGACg -3'
miRNA:   3'- caGCCc-GGCU--UUCg----CCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 136401 0.73 0.39364
Target:  5'- gGUCGGuaGCCgGGGAGCuGGUCCUGGgGGCc -3'
miRNA:   3'- -CAGCC--CGG-CUUUCG-CCAGGGCCgCUG- -5'
16201 5' -61.4 NC_004065.1 + 154786 0.72 0.417806
Target:  5'- cUCGGGCgCGAAuGCGGUCgCGuaGACu -3'
miRNA:   3'- cAGCCCG-GCUUuCGCCAGgGCcgCUG- -5'
16201 5' -61.4 NC_004065.1 + 111865 0.72 0.426059
Target:  5'- -aCGGccGCCGcc-GCGGUCUCGGUGACa -3'
miRNA:   3'- caGCC--CGGCuuuCGCCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 74837 0.72 0.442853
Target:  5'- gGUCGGGaCCGAGGGgcgcaGGUUgaGGCGGCg -3'
miRNA:   3'- -CAGCCC-GGCUUUCg----CCAGggCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 198021 0.72 0.460014
Target:  5'- cUCGGaGgCGGucGCGGUCgCCGGCGGu -3'
miRNA:   3'- cAGCC-CgGCUuuCGCCAG-GGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 157717 0.72 0.460015
Target:  5'- cGUCGGGaCC----GCGGUCgCGGCGAUg -3'
miRNA:   3'- -CAGCCC-GGcuuuCGCCAGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 150903 0.72 0.460015
Target:  5'- cGUCGGGaacaagggguCCGAcGGCGGcUCCGGCGGg -3'
miRNA:   3'- -CAGCCC----------GGCUuUCGCCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 41498 0.72 0.460015
Target:  5'- cGUCGGGaCGGggagcgcgcGGGCGGUCCCGccagagucGCGGCc -3'
miRNA:   3'- -CAGCCCgGCU---------UUCGCCAGGGC--------CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 139853 0.71 0.477522
Target:  5'- -gCGGGCgacggCGGAGGCGGcggagCCGGCGGCa -3'
miRNA:   3'- caGCCCG-----GCUUUCGCCag---GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 32826 0.71 0.486398
Target:  5'- cGUCGGGCCGcucguccgagaagguGAGcCGGUCCagcgcguUGGCGAUg -3'
miRNA:   3'- -CAGCCCGGCu--------------UUC-GCCAGG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 153611 0.71 0.494453
Target:  5'- aUCGGGUCGGcucGGGCGGcgCCacucggaCGGCGGCg -3'
miRNA:   3'- cAGCCCGGCU---UUCGCCa-GG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 104894 0.71 0.495352
Target:  5'- -aCGcGGCUGGGcgacggcgcGGUGGUgCCGGCGGCg -3'
miRNA:   3'- caGC-CCGGCUU---------UCGCCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 116314 0.71 0.495352
Target:  5'- uGUCGGcGUCGgcGGCGG-CagCGGCGACg -3'
miRNA:   3'- -CAGCC-CGGCuuUCGCCaGg-GCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.