Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16201 | 5' | -61.4 | NC_004065.1 | + | 209553 | 0.67 | 0.730654 |
Target: 5'- -gCGGGaCUGAAGGaGG-CCCGGcCGGCu -3' miRNA: 3'- caGCCC-GGCUUUCgCCaGGGCC-GCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 172097 | 0.67 | 0.730654 |
Target: 5'- --gGGGCCGGgggAGGCGGcucugaCCgCGGUGGCu -3' miRNA: 3'- cagCCCGGCU---UUCGCCa-----GG-GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 162283 | 0.67 | 0.730654 |
Target: 5'- uUCGGGCgguugcucgUGAacGAGCGGUCgcucgucaCGGCGAUa -3' miRNA: 3'- cAGCCCG---------GCU--UUCGCCAGg-------GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 197939 | 0.67 | 0.73982 |
Target: 5'- gGUCGGcgaGUCG-AAGCGGUCgCGGCa-- -3' miRNA: 3'- -CAGCC---CGGCuUUCGCCAGgGCCGcug -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 136679 | 0.67 | 0.748903 |
Target: 5'- gGUCuGGCCGgcGGCGGg-CCGGCu-- -3' miRNA: 3'- -CAGcCCGGCuuUCGCCagGGCCGcug -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 6157 | 0.67 | 0.748903 |
Target: 5'- aUCcGGCCGAGauGGcCGGgCCgGGCGGCc -3' miRNA: 3'- cAGcCCGGCUU--UC-GCCaGGgCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 166912 | 0.67 | 0.748903 |
Target: 5'- -aCGGGCCGuccaccGGCuGUCUCGGC-ACg -3' miRNA: 3'- caGCCCGGCuu----UCGcCAGGGCCGcUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 109143 | 0.67 | 0.748904 |
Target: 5'- -gCGGG-UGAcGGCGGUUCCGuCGACa -3' miRNA: 3'- caGCCCgGCUuUCGCCAGGGCcGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 184885 | 0.67 | 0.748904 |
Target: 5'- -cCGGGaacgagagaggaUCGGGAGCGGgcgCCCgGGUGGCu -3' miRNA: 3'- caGCCC------------GGCUUUCGCCa--GGG-CCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 169450 | 0.66 | 0.757002 |
Target: 5'- aUCGGgcgccccGCCGuguGCGGaCCCGGCGuCu -3' miRNA: 3'- cAGCC-------CGGCuuuCGCCaGGGCCGCuG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 128767 | 0.66 | 0.757898 |
Target: 5'- -gCGGcagcGuuGAGGGCGccGUCgCCGGCGGCa -3' miRNA: 3'- caGCC----CggCUUUCGC--CAG-GGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 18040 | 0.66 | 0.766794 |
Target: 5'- cGUCGGGCUGcgcGAGGuCGaGUCUgaucucgacgaUGGCGGCa -3' miRNA: 3'- -CAGCCCGGC---UUUC-GC-CAGG-----------GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 119997 | 0.66 | 0.766794 |
Target: 5'- -gCGGGUgGAAgaacacggcgGGCGGUgCCGGCuGAa -3' miRNA: 3'- caGCCCGgCUU----------UCGCCAgGGCCG-CUg -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 30092 | 0.66 | 0.770324 |
Target: 5'- -gCGaGGCC---AGCGGUagcgagagcugcagcCCCGGCGGCc -3' miRNA: 3'- caGC-CCGGcuuUCGCCA---------------GGGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 1811 | 0.66 | 0.775586 |
Target: 5'- -gCGGcGgCGAucGCGGUUCCcguGGUGACg -3' miRNA: 3'- caGCC-CgGCUuuCGCCAGGG---CCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 194440 | 0.66 | 0.775586 |
Target: 5'- -cCGGGCgccuCGGucgAAGCGGUUgggcaCGGCGGCg -3' miRNA: 3'- caGCCCG----GCU---UUCGCCAGg----GCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 113627 | 0.66 | 0.775586 |
Target: 5'- --gGGGCUGGAAGCGGacCCCGuCGuCg -3' miRNA: 3'- cagCCCGGCUUUCGCCa-GGGCcGCuG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 120886 | 0.66 | 0.775586 |
Target: 5'- --gGGGUC-AGGGCGGcgucUCgCGGCGACa -3' miRNA: 3'- cagCCCGGcUUUCGCC----AGgGCCGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 107173 | 0.66 | 0.780807 |
Target: 5'- gGUgGGGCUGGAcGCGGUCgucaaggacaagaCGcGCGACu -3' miRNA: 3'- -CAgCCCGGCUUuCGCCAGg------------GC-CGCUG- -5' |
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16201 | 5' | -61.4 | NC_004065.1 | + | 165857 | 0.66 | 0.783402 |
Target: 5'- --gGGGCCGGAcGGUcucucacGGUCCCgaaGGCGAg -3' miRNA: 3'- cagCCCGGCUU-UCG-------CCAGGG---CCGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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