miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 128767 0.66 0.757898
Target:  5'- -gCGGcagcGuuGAGGGCGccGUCgCCGGCGGCa -3'
miRNA:   3'- caGCC----CggCUUUCGC--CAG-GGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 169450 0.66 0.757002
Target:  5'- aUCGGgcgccccGCCGuguGCGGaCCCGGCGuCu -3'
miRNA:   3'- cAGCC-------CGGCuuuCGCCaGGGCCGCuG- -5'
16201 5' -61.4 NC_004065.1 + 184885 0.67 0.748904
Target:  5'- -cCGGGaacgagagaggaUCGGGAGCGGgcgCCCgGGUGGCu -3'
miRNA:   3'- caGCCC------------GGCUUUCGCCa--GGG-CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 109143 0.67 0.748904
Target:  5'- -gCGGG-UGAcGGCGGUUCCGuCGACa -3'
miRNA:   3'- caGCCCgGCUuUCGCCAGGGCcGCUG- -5'
16201 5' -61.4 NC_004065.1 + 6157 0.67 0.748903
Target:  5'- aUCcGGCCGAGauGGcCGGgCCgGGCGGCc -3'
miRNA:   3'- cAGcCCGGCUU--UC-GCCaGGgCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 166912 0.67 0.748903
Target:  5'- -aCGGGCCGuccaccGGCuGUCUCGGC-ACg -3'
miRNA:   3'- caGCCCGGCuu----UCGcCAGGGCCGcUG- -5'
16201 5' -61.4 NC_004065.1 + 136679 0.67 0.748903
Target:  5'- gGUCuGGCCGgcGGCGGg-CCGGCu-- -3'
miRNA:   3'- -CAGcCCGGCuuUCGCCagGGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 197939 0.67 0.73982
Target:  5'- gGUCGGcgaGUCG-AAGCGGUCgCGGCa-- -3'
miRNA:   3'- -CAGCC---CGGCuUUCGCCAGgGCCGcug -5'
16201 5' -61.4 NC_004065.1 + 172097 0.67 0.730654
Target:  5'- --gGGGCCGGgggAGGCGGcucugaCCgCGGUGGCu -3'
miRNA:   3'- cagCCCGGCU---UUCGCCa-----GG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 200577 0.67 0.730654
Target:  5'- -aCGGGUgGAGaagGGUGGUCgCGGCGu- -3'
miRNA:   3'- caGCCCGgCUU---UCGCCAGgGCCGCug -5'
16201 5' -61.4 NC_004065.1 + 162283 0.67 0.730654
Target:  5'- uUCGGGCgguugcucgUGAacGAGCGGUCgcucgucaCGGCGAUa -3'
miRNA:   3'- cAGCCCG---------GCU--UUCGCCAGg-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 209553 0.67 0.730654
Target:  5'- -gCGGGaCUGAAGGaGG-CCCGGcCGGCu -3'
miRNA:   3'- caGCCC-GGCUUUCgCCaGGGCC-GCUG- -5'
16201 5' -61.4 NC_004065.1 + 198607 0.67 0.727889
Target:  5'- cGUCGaGCuCGGAGGCguacucugcgccagGGUCCCGGCcGAg -3'
miRNA:   3'- -CAGCcCG-GCUUUCG--------------CCAGGGCCG-CUg -5'
16201 5' -61.4 NC_004065.1 + 201419 0.67 0.721413
Target:  5'- -gCGGGUCGGGAGUGGaaccacagcUCCUGGuCGGg -3'
miRNA:   3'- caGCCCGGCUUUCGCC---------AGGGCC-GCUg -5'
16201 5' -61.4 NC_004065.1 + 223213 0.67 0.721413
Target:  5'- -aCGGGaguCGucGGCGGUagCGGCGACg -3'
miRNA:   3'- caGCCCg--GCuuUCGCCAggGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 195217 0.67 0.721412
Target:  5'- aUUGGGCC--AGGUGGUgCCCGGaCGGg -3'
miRNA:   3'- cAGCCCGGcuUUCGCCA-GGGCC-GCUg -5'
16201 5' -61.4 NC_004065.1 + 35597 0.67 0.712105
Target:  5'- cGUCGGcgguGUCGGu-GCGGgaUCCaCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUuuCGCC--AGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 34772 0.67 0.702736
Target:  5'- -cCGGGCCaGAucGCGG-CCgCGGUGGu -3'
miRNA:   3'- caGCCCGG-CUuuCGCCaGG-GCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 168632 0.68 0.693317
Target:  5'- -cUGGuGCCGcgGGCGGagCCGGCGcgGCg -3'
miRNA:   3'- caGCC-CGGCuuUCGCCagGGCCGC--UG- -5'
16201 5' -61.4 NC_004065.1 + 208004 0.68 0.693316
Target:  5'- --gGGGCCGu-GGCcgGGUUagugCCGGCGGCg -3'
miRNA:   3'- cagCCCGGCuuUCG--CCAG----GGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.