miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16201 5' -61.4 NC_004065.1 + 1811 0.66 0.775586
Target:  5'- -gCGGcGgCGAucGCGGUUCCcguGGUGACg -3'
miRNA:   3'- caGCC-CgGCUuuCGCCAGGG---CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 6157 0.67 0.748903
Target:  5'- aUCcGGCCGAGauGGcCGGgCCgGGCGGCc -3'
miRNA:   3'- cAGcCCGGCUU--UC-GCCaGGgCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 18040 0.66 0.766794
Target:  5'- cGUCGGGCUGcgcGAGGuCGaGUCUgaucucgacgaUGGCGGCa -3'
miRNA:   3'- -CAGCCCGGC---UUUC-GC-CAGG-----------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 25882 0.68 0.655261
Target:  5'- aUCGGGgaCGAAGGUuaucacGGcCCCGGCGGg -3'
miRNA:   3'- cAGCCCg-GCUUUCG------CCaGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 26861 0.66 0.792823
Target:  5'- -cUGGaaGUCGAGAGaCGGUCCUcgggucgcgagGGCGGCa -3'
miRNA:   3'- caGCC--CGGCUUUC-GCCAGGG-----------CCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 30092 0.66 0.770324
Target:  5'- -gCGaGGCC---AGCGGUagcgagagcugcagcCCCGGCGGCc -3'
miRNA:   3'- caGC-CCGGcuuUCGCCA---------------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 31076 0.69 0.587336
Target:  5'- cUCGcGGCUGGuggccacGGGCGGcgaucagaacgCCCGGCGGCg -3'
miRNA:   3'- cAGC-CCGGCU-------UUCGCCa----------GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 32341 0.68 0.664817
Target:  5'- cGUCGaGUCGAGcGGCGGUCgguaCGGCGAg -3'
miRNA:   3'- -CAGCcCGGCUU-UCGCCAGg---GCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 32826 0.71 0.486398
Target:  5'- cGUCGGGCCGcucguccgagaagguGAGcCGGUCCagcgcguUGGCGAUg -3'
miRNA:   3'- -CAGCCCGGCu--------------UUC-GCCAGG-------GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 34772 0.67 0.702736
Target:  5'- -cCGGGCCaGAucGCGG-CCgCGGUGGu -3'
miRNA:   3'- caGCCCGG-CUuuCGCCaGG-GCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 35597 0.67 0.712105
Target:  5'- cGUCGGcgguGUCGGu-GCGGgaUCCaCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUuuCGCC--AGG-GCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 37490 0.69 0.636108
Target:  5'- --aGGGCUGu--GCGGaccCCUGGCGGCu -3'
miRNA:   3'- cagCCCGGCuuuCGCCa--GGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 41498 0.72 0.460015
Target:  5'- cGUCGGGaCGGggagcgcgcGGGCGGUCCCGccagagucGCGGCc -3'
miRNA:   3'- -CAGCCCgGCU---------UUCGCCAGGGC--------CGCUG- -5'
16201 5' -61.4 NC_004065.1 + 43577 0.73 0.373443
Target:  5'- -aCGGGCCugccucuggcguggaGGAAGaUGGUCCCGGUGAg -3'
miRNA:   3'- caGCCCGG---------------CUUUC-GCCAGGGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 55346 0.73 0.39364
Target:  5'- -aCGGacCCGAcgGAGaacgaGGUCCCGGCGACg -3'
miRNA:   3'- caGCCc-GGCU--UUCg----CCAGGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 55782 0.68 0.664817
Target:  5'- cUCGGcGCCGAgcAGGCGaUCgCGGCuGACg -3'
miRNA:   3'- cAGCC-CGGCU--UUCGCcAGgGCCG-CUG- -5'
16201 5' -61.4 NC_004065.1 + 62345 0.68 0.687643
Target:  5'- cUCGGGCUGGGucgucgguuuucgacGGCGGUggCGGCGGg -3'
miRNA:   3'- cAGCCCGGCUU---------------UCGCCAggGCCGCUg -5'
16201 5' -61.4 NC_004065.1 + 64207 0.69 0.588288
Target:  5'- -gCGGG-CGGAGGCaGUgUCGGCGGCg -3'
miRNA:   3'- caGCCCgGCUUUCGcCAgGGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 68142 0.68 0.655261
Target:  5'- uGUCGGacgaGCUGGAcGCGGugaUCgCGGCGGCg -3'
miRNA:   3'- -CAGCC----CGGCUUuCGCC---AGgGCCGCUG- -5'
16201 5' -61.4 NC_004065.1 + 68745 0.71 0.513479
Target:  5'- gGUCGcuGCCGGAcucggacaucgcGGCGGUgCUGGCGGCc -3'
miRNA:   3'- -CAGCc-CGGCUU------------UCGCCAgGGCCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.